Mercurial > repos > tduigou > rptools_rpcompletion
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 96a30e92eab3144b924fdba7b63be10b218160a7
author | tduigou |
---|---|
date | Wed, 24 Jul 2024 08:42:16 +0000 |
parents | ae16d7ce27d1 |
children |
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<?xml version="1.0" encoding="UTF-8"?> <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false"> <model metaid="a03e1bf0f20b54a66f7b4ce262ea6b0f7579c0a1e47144a649b9e2e711f6b3ed" id="RP_model_001_0001" name="001_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true"> <listOfCompartments> <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/> <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/> <rdf:li rdf:resource="http://identifiers.org/seed/c"/> <rdf:li rdf:resource="http://identifiers.org/seed/c0"/> <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/> <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> </compartment> </listOfCompartments> <listOfSpecies> <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="[H]C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/> <brsynth:inchi value="InChI=1S/C8H8/c1-2-8-6-4-3-5-7-8/h2-7H,1H2"/> <brsynth:inchikey value="PPBRXRYQALVLMV-UHFFFAOYSA-N"/> <brsynth:fba_biomass_shadow_price> <brsynth:value value="-0.0"/> </brsynth:fba_biomass_shadow_price> <brsynth:fba_fraction_shadow_price> <brsynth:value value="-1.0"/> </brsynth:fba_fraction_shadow_price> <brsynth:thermo_standard_dg_formation> <brsynth:value value="208.92559504464236"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_standard_dg_formation> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> </species> <species metaid="ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25" id="MNXM1" name="MNXM1" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="[H+]"/> <brsynth:inchi value="InChI=1S/p+1"/> <brsynth:inchikey value="GPRLSGONYQIRFK-UHFFFAOYSA-N"/> <brsynth:fba_biomass_shadow_price> <brsynth:value value="None"/> </brsynth:fba_biomass_shadow_price> <brsynth:fba_fraction_shadow_price> <brsynth:value value="None"/> </brsynth:fba_fraction_shadow_price> <brsynth:thermo_standard_dg_formation> <brsynth:value value="NaN"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_standard_dg_formation> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> </species> <species metaid="_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16" id="CMPD_0000000002" name="CMPD_0000000002" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/> <brsynth:inchi value="InChI=1S/C9H8O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-7H,(H,10,11)"/> <brsynth:inchikey value="WBYWAXJHAXSJNI-UHFFFAOYSA-N"/> <brsynth:fba_biomass_shadow_price> <brsynth:value value="-0.0009404190769783985"/> </brsynth:fba_biomass_shadow_price> <brsynth:fba_fraction_shadow_price> <brsynth:value value="-1.0057339449541285"/> </brsynth:fba_fraction_shadow_price> <brsynth:thermo_standard_dg_formation> <brsynth:value value="-127.1962856224608"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_standard_dg_formation> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> </species> <species metaid="_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b" id="MNXM15" name="MNXM15" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="N"/> <brsynth:inchi value="InChI=1S/H3N/h1H3"/> <brsynth:inchikey value="QGZKDVFQNNGYKY-UHFFFAOYSA-N"/> <brsynth:fba_biomass_shadow_price> <brsynth:value value="None"/> </brsynth:fba_biomass_shadow_price> <brsynth:fba_fraction_shadow_price> <brsynth:value value="None"/> </brsynth:fba_fraction_shadow_price> <brsynth:thermo_standard_dg_formation> <brsynth:value value="-81.91776181003092"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_standard_dg_formation> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> </species> <species metaid="_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251" id="MNXM13" name="MNXM13" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="O=C=O"/> <brsynth:inchi value="InChI=1S/CO2/c2-1-3"/> <brsynth:inchikey value="CURLTUGMZLYLDI-UHFFFAOYSA-N"/> <brsynth:fba_biomass_shadow_price> <brsynth:value value="None"/> </brsynth:fba_biomass_shadow_price> <brsynth:fba_fraction_shadow_price> <brsynth:value value="None"/> </brsynth:fba_fraction_shadow_price> <brsynth:thermo_standard_dg_formation> <brsynth:value value="-386.0000000000019"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_standard_dg_formation> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> </species> <species metaid="fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9" id="MNXM97" name="MNXM97" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="[H]OC(=O)C([H])(N([H])[H])C([H])([H])c1c([H])c([H])c([H])c([H])c1[H]"/> <brsynth:inchi value="InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)"/> <brsynth:inchikey value="COLNVLDHVKWLRT-UHFFFAOYSA-N"/> <brsynth:fba_biomass_shadow_price> <brsynth:value value="None"/> </brsynth:fba_biomass_shadow_price> <brsynth:fba_fraction_shadow_price> <brsynth:value value="None"/> </brsynth:fba_fraction_shadow_price> <brsynth:thermo_standard_dg_formation> <brsynth:value value="-207.07052002003908"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_standard_dg_formation> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> </species> </listOfSpecies> <listOfParameters> <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/> <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/> </listOfParameters> <listOfReactions> <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.25"/> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.24"/> </rdf:Bag> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="[H]OC(=O)C([H])(N([H])[H])C([H])([H])c1c([H])c([H])c([H])c([H])c1[H]>>[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H].N"/> <brsynth:rp2_transfo_id value="TRS_0_1_1"/> <brsynth:rule_id value="RR-02-3545d6ed74034d56-16-F"/> <brsynth:tmpl_rxn_ids> <brsynth:MNXR106649/> <brsynth:MNXR131345/> </brsynth:tmpl_rxn_ids> <brsynth:rule_score value="0.5869134225065102"/> <brsynth:idx_in_path value="1"/> <brsynth:selenzy/> <brsynth:fba_biomass> <brsynth:value value="0.0"/> <brsynth:units value="gDW / gDW / hour"/> </brsynth:fba_biomass> <brsynth:fba_fraction> <brsynth:value value="1.3666677776240859"/> <brsynth:units value="milimole / gDW / hour"/> </brsynth:fba_fraction> <brsynth:thermo_dG0_prime> <brsynth:value value="-3.619165315209898"/> <brsynth:error value="0.5540714922475698"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG0_prime> <brsynth:thermo_dGm_prime> <brsynth:value value="-20.73400284993093"/> <brsynth:error value="0.5540714922475698"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dGm_prime> <brsynth:thermo_dG_prime> <brsynth:value value="-3.619165315209898"/> <brsynth:error value="0.5540714922475698"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG_prime> <brsynth:thermo_dG> <brsynth:value value="-2.0435274124526472"/> <brsynth:error value="0.5540714922475698"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> <listOfReactants> <speciesReference species="MNXM97" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="CMPD_0000000002" stoichiometry="1" constant="true"/> <speciesReference species="MNXM15" stoichiometry="1" constant="true"/> </listOfProducts> </reaction> <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.102"/> </rdf:Bag> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles value="[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H].[H+]>>O=C=O.[H]C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/> <brsynth:rp2_transfo_id value="TRS_0_0_0"/> <brsynth:rule_id value="RR-02-caf68bc1dcd9ce0f-16-F"/> <brsynth:tmpl_rxn_ids> <brsynth:MNXR114372/> </brsynth:tmpl_rxn_ids> <brsynth:rule_score value="1.0"/> <brsynth:idx_in_path value="2"/> <brsynth:selenzy/> <brsynth:fba_biomass> <brsynth:value value="0.0"/> <brsynth:units value="gDW / gDW / hour"/> </brsynth:fba_biomass> <brsynth:fba_fraction> <brsynth:value value="1.3666677776240859"/> <brsynth:units value="milimole / gDW / hour"/> </brsynth:fba_fraction> <brsynth:thermo_dG0_prime> <brsynth:value value="-5.570411694686811"/> <brsynth:error value="5.365139708628456"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG0_prime> <brsynth:thermo_dGm_prime> <brsynth:value value="-22.685249229407844"/> <brsynth:error value="5.365139708628456"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dGm_prime> <brsynth:thermo_dG_prime> <brsynth:value value="-5.570411694686811"/> <brsynth:error value="5.365139708628456"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG_prime> <brsynth:thermo_dG> <brsynth:value value="-49.87811933289868"/> <brsynth:error value="5.365139708628456"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> <listOfReactants> <speciesReference species="CMPD_0000000002" stoichiometry="1" constant="true"/> <speciesReference species="MNXM1" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="MNXM13" stoichiometry="1" constant="true"/> <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/> </listOfProducts> </reaction> </listOfReactions> <groups:listOfGroups> <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:fba_biomass> <brsynth:value value="0.8769972144269752"/> <brsynth:units value="gDW / gDW / hour"/> </brsynth:fba_biomass> <brsynth:fba_fraction> <brsynth:value value="1.3666677776240859"/> <brsynth:units value="milimole / gDW / hour"/> </brsynth:fba_fraction> <brsynth:thermo_dG0_prime> <brsynth:value value="-9.189577009896766"/> <brsynth:error value="5.336452836371218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG0_prime> <brsynth:thermo_dGm_prime> <brsynth:value value="-43.41925207933883"/> <brsynth:error value="5.336452836371218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dGm_prime> <brsynth:thermo_dG_prime> <brsynth:value value="-9.189577009896766"/> <brsynth:error value="5.336452836371218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG_prime> <brsynth:thermo_dG> <brsynth:value value="-51.92164674535138"/> <brsynth:error value="5.336452836371218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="rxn_1"/> <groups:member groups:idRef="rxn_2"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="CMPD_0000000002"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="TARGET_0000000001"/> <groups:member groups:idRef="MNXM97"/> <groups:member groups:idRef="CMPD_0000000002"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM1"/> <groups:member groups:idRef="MNXM13"/> <groups:member groups:idRef="MNXM15"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM1"/> <groups:member groups:idRef="MNXM13"/> <groups:member groups:idRef="MNXM97"/> <groups:member groups:idRef="MNXM15"/> </groups:listOfMembers> </groups:group> <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> </groups:group> <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> </groups:group> </groups:listOfGroups> </model> </sbml>