Mercurial > repos > tduigou > rptools_rpreport

comparison test-data/rp_001_0001_rpfba_in.xml @ 1:0337a6270694 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 14:56:06 +0000
parents
children
comparison
equal deleted inserted replaced
0:a1764894d6ca 1:0337a6270694
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="a03e1bf0f20b54a66f7b4ce262ea6b0f7579c0a1e47144a649b9e2e711f6b3ed" id="RP_model_001_0001" name="001_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
26 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
27 <annotation>
28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
29 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
30 <bqbiol:is>
31 <rdf:Bag/>
32 </bqbiol:is>
33 </rdf:Description>
34 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
36 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
37 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
38 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
39 </brsynth:brsynth>
40 </rdf:BRSynth>
41 </rdf:RDF>
42 </annotation>
43 </species>
44 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="isopentenyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
45 <annotation>
46 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
47 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
48 <bqbiol:is>
49 <rdf:Bag/>
50 </bqbiol:is>
51 </rdf:Description>
52 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
53 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
54 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
55 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
56 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
57 </brsynth:brsynth>
58 </rdf:BRSynth>
59 </rdf:RDF>
60 </annotation>
61 </species>
62 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
63 <annotation>
64 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
65 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
66 <bqbiol:is>
67 <rdf:Bag/>
68 </bqbiol:is>
69 </rdf:Description>
70 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
71 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
72 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
73 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
74 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
75 </brsynth:brsynth>
76 </rdf:BRSynth>
77 </rdf:RDF>
78 </annotation>
79 </species>
80 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
81 <annotation>
82 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
83 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
84 <bqbiol:is>
85 <rdf:Bag/>
86 </bqbiol:is>
87 </rdf:Description>
88 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
89 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
90 <brsynth:smiles/>
91 <brsynth:inchi/>
92 <brsynth:inchikey/>
93 </brsynth:brsynth>
94 </rdf:BRSynth>
95 </rdf:RDF>
96 </annotation>
97 </species>
98 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
99 <annotation>
100 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
101 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
102 <bqbiol:is>
103 <rdf:Bag/>
104 </bqbiol:is>
105 </rdf:Description>
106 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
107 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
108 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
109 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
110 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
111 </brsynth:brsynth>
112 </rdf:BRSynth>
113 </rdf:RDF>
114 </annotation>
115 </species>
116 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="dimethylallyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
117 <annotation>
118 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
119 <rdf:Description rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
120 <bqbiol:is>
121 <rdf:Bag/>
122 </bqbiol:is>
123 </rdf:Description>
124 <rdf:BRSynth rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
125 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
126 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
127 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
128 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
129 </brsynth:brsynth>
130 </rdf:BRSynth>
131 </rdf:RDF>
132 </annotation>
133 </species>
134 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
135 <annotation>
136 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
137 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
138 <bqbiol:is>
139 <rdf:Bag/>
140 </bqbiol:is>
141 </rdf:Description>
142 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
143 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
144 <brsynth:smiles/>
145 <brsynth:inchi/>
146 <brsynth:inchikey/>
147 </brsynth:brsynth>
148 </rdf:BRSynth>
149 </rdf:RDF>
150 </annotation>
151 </species>
152 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
153 <annotation>
154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
155 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
156 <bqbiol:is>
157 <rdf:Bag/>
158 </bqbiol:is>
159 </rdf:Description>
160 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
161 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
162 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
163 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
164 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
165 </brsynth:brsynth>
166 </rdf:BRSynth>
167 </rdf:RDF>
168 </annotation>
169 </species>
170 </listOfSpecies>
171 <listOfParameters>
172 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_999999" value="999999" units="mmol_per_gDW_per_hr" constant="true"/>
173 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0" value="0" units="mmol_per_gDW_per_hr" constant="true"/>
174 </listOfParameters>
175 <listOfReactions>
176 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
177 <annotation>
178 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
179 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
180 <bqbiol:is>
181 <rdf:Bag>
182 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
183 </rdf:Bag>
184 </bqbiol:is>
185 </rdf:Description>
186 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
187 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
188 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
189 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
190 <brsynth:rule_ids>
191 <brsynth:RR-02-bdf7d8715e2e4d93-16-F/>
192 </brsynth:rule_ids>
193 <brsynth:tmpl_rxn_ids>
194 <brsynth:MNXR113128/>
195 </brsynth:tmpl_rxn_ids>
196 <brsynth:rule_score value="0.7486085128675456"/>
197 <brsynth:idx_in_path value="3"/>
198 </brsynth:brsynth>
199 </rdf:BRSynth>
200 </rdf:RDF>
201 </annotation>
202 <listOfReactants>
203 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
204 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
205 </listOfReactants>
206 <listOfProducts>
207 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
208 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
209 </listOfProducts>
210 </reaction>
211 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
212 <annotation>
213 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
214 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
215 <bqbiol:is>
216 <rdf:Bag>
217 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
218 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
219 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
220 </rdf:Bag>
221 </bqbiol:is>
222 </rdf:Description>
223 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
224 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
225 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
226 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
227 <brsynth:rule_ids>
228 <brsynth:RR-02-b25156a335e3e30f-16-F/>
229 </brsynth:rule_ids>
230 <brsynth:tmpl_rxn_ids>
231 <brsynth:MNXR111250/>
232 <brsynth:MNXR111499/>
233 <brsynth:MNXR113543/>
234 <brsynth:MNXR118024/>
235 <brsynth:MNXR139549/>
236 </brsynth:tmpl_rxn_ids>
237 <brsynth:rule_score value="0.5683242688496836"/>
238 <brsynth:idx_in_path value="2"/>
239 </brsynth:brsynth>
240 </rdf:BRSynth>
241 </rdf:RDF>
242 </annotation>
243 <listOfReactants>
244 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
245 </listOfReactants>
246 <listOfProducts>
247 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
248 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
249 </listOfProducts>
250 </reaction>
251 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
252 <annotation>
253 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
254 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
255 <bqbiol:is>
256 <rdf:Bag>
257 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
258 </rdf:Bag>
259 </bqbiol:is>
260 </rdf:Description>
261 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
262 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
263 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
264 <brsynth:rp2_transfo_id value="TRS_0_2_363"/>
265 <brsynth:rule_ids>
266 <brsynth:RR-02-90bcfd187709eb1b-16-F/>
267 </brsynth:rule_ids>
268 <brsynth:tmpl_rxn_ids>
269 <brsynth:MNXR132232/>
270 </brsynth:tmpl_rxn_ids>
271 <brsynth:rule_score value="0.5869134225065102"/>
272 <brsynth:idx_in_path value="1"/>
273 </brsynth:brsynth>
274 </rdf:BRSynth>
275 </rdf:RDF>
276 </annotation>
277 <listOfReactants>
278 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
279 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
280 </listOfReactants>
281 <listOfProducts>
282 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
283 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
284 </listOfProducts>
285 </reaction>
286 </listOfReactions>
287 <groups:listOfGroups>
288 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
289 <annotation>
290 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
291 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
292 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
293 <brsynth:global_score value="-1"/>
294 </brsynth:brsynth>
295 </rdf:BRSynth>
296 </rdf:RDF>
297 </annotation>
298 <groups:listOfMembers>
299 <groups:member groups:idRef="rxn_1"/>
300 <groups:member groups:idRef="rxn_2"/>
301 <groups:member groups:idRef="rxn_3"/>
302 </groups:listOfMembers>
303 </groups:group>
304 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
305 <annotation>
306 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
307 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
308 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
309 </rdf:BRSynth>
310 </rdf:RDF>
311 </annotation>
312 <groups:listOfMembers>
313 <groups:member groups:idRef="CMPD_0000000003"/>
314 <groups:member groups:idRef="CMPD_0000000001"/>
315 </groups:listOfMembers>
316 </groups:group>
317 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
318 <annotation>
319 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
320 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
321 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
322 </rdf:BRSynth>
323 </rdf:RDF>
324 </annotation>
325 <groups:listOfMembers>
326 <groups:member groups:idRef="TARGET_0000000001"/>
327 <groups:member groups:idRef="MNXM83"/>
328 <groups:member groups:idRef="CMPD_0000000001"/>
329 <groups:member groups:idRef="MNXM132"/>
330 <groups:member groups:idRef="CMPD_0000000003"/>
331 </groups:listOfMembers>
332 </groups:group>
333 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
334 <annotation>
335 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
336 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
337 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
338 </rdf:BRSynth>
339 </rdf:RDF>
340 </annotation>
341 <groups:listOfMembers>
342 <groups:member groups:idRef="MNXM8975"/>
343 <groups:member groups:idRef="MNXM24"/>
344 <groups:member groups:idRef="MNXM11"/>
345 </groups:listOfMembers>
346 </groups:group>
347 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
348 <annotation>
349 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
350 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
351 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
352 </rdf:BRSynth>
353 </rdf:RDF>
354 </annotation>
355 <groups:listOfMembers>
356 <groups:member groups:idRef="MNXM83"/>
357 <groups:member groups:idRef="MNXM132"/>
358 <groups:member groups:idRef="MNXM11"/>
359 </groups:listOfMembers>
360 </groups:group>
361 </groups:listOfGroups>
362 </model>
363 </sbml>