Mercurial > repos > tduigou > rptools_rpreport
comparison rpreport.xml @ 2:432623008c84 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690
author | tduigou |
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date | Tue, 28 Mar 2023 12:10:56 +0000 |
parents | a1764894d6ca |
children | a03d4c0887cc |
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1:0337a6270694 | 2:432623008c84 |
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1 <tool id="rptools_rpreport" name="Pathways HTML Report" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> | 1 <tool id="rptools_rpreport" name="Pathways HTML Report" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> |
2 <description>Explore the main characteristics of pathways predicted with RetroPath suite</description> | 2 <description>Explore the main characteristics of pathways predicted with RetroPath suite</description> |
3 <macros> | 3 <macros> |
4 <token name="@VERSION_SUFFIX@">0</token> | 4 <import>macros.xml</import> |
5 <token name="@TOOL_VERSION@">5.13.1</token> | |
6 </macros> | 5 </macros> |
7 <requirements> | 6 <expand macro="requirements"/> |
8 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> | |
9 </requirements> | |
10 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
11 #if str($input_type_conditional.input_type) == "sbml": | 8 #if str($input_type_conditional.input_type) == "sbml": |
12 #set input_folder="tmp_folder" | 9 #set input_folder="tmp_folder" |
13 mkdir -p '$input_folder' && | 10 mkdir -p '$input_folder' && |
14 #for $input in $input_type_conditional.input_sbml.keys(): | 11 #for $input in $input_type_conditional.input_sbml.keys(): |
38 <outputs> | 35 <outputs> |
39 <data name="html_file" format="html" label="Pathways HTML Report"/> | 36 <data name="html_file" format="html" label="Pathways HTML Report"/> |
40 </outputs> | 37 </outputs> |
41 <tests> | 38 <tests> |
42 <test> | 39 <test> |
43 <!-- test 1: check if identical html output is produced (tar input) --> | 40 <!-- test 1: check if identical html output is produced (tar input) --> |
44 <conditional name="input_type_conditional"> | 41 <conditional name="input_type_conditional"> |
45 <param name="input_type" value="tar"/> | 42 <param name="input_type" value="tar"/> |
46 <param name="input_tar" value="input_rpSBML.tar" /> | 43 <param name="input_tar" value="input_rpSBML.tar" /> |
47 </conditional> | 44 </conditional> |
48 <output name="html_file" file="rpreport_output.html" compare="diff"/> | 45 <output name="html_file" file="rpreport_output.html" compare="diff"/> |
66 | 63 |
67 Output | 64 Output |
68 ------ | 65 ------ |
69 | 66 |
70 * **Pathways HTML Report**: Pathways HTML Report | 67 * **Pathways HTML Report**: Pathways HTML Report |
71 | |
72 Project Links | |
73 --------------------- | |
74 | |
75 * `GitHub <https://github.com/brsynth/rptools>`_ | |
76 | |
77 Acknowledgments | |
78 --------------- | |
79 | |
80 * Thomas Duigou | |
81 * Joan Hérisson | |
82 | |
83 Licence | |
84 ------- | |
85 | |
86 `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ | |
87 ]]></help> | 68 ]]></help> |
88 <creator> | 69 <expand macro="creator"/> |
89 <person givenName="Olivier" familyName="Telle" email="olivier.telle@inrae.fr" /> | 70 <citations> |
90 </creator> | 71 <citation type="doi">10.1038/s41467-022-32661-x</citation> |
72 </citations> | |
91 </tool> | 73 </tool> |