Mercurial > repos > tduigou > rptools_rpreport

comparison rpreport.xml @ 2:432623008c84 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690
author tduigou
date Tue, 28 Mar 2023 12:10:56 +0000
parents a1764894d6ca
children a03d4c0887cc
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1:0337a6270694 2:432623008c84
1 <tool id="rptools_rpreport" name="Pathways HTML Report" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> 1 <tool id="rptools_rpreport" name="Pathways HTML Report" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
2 <description>Explore the main characteristics of pathways predicted with RetroPath suite</description> 2 <description>Explore the main characteristics of pathways predicted with RetroPath suite</description>
3 <macros> 3 <macros>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <import>macros.xml</import>
5 <token name="@TOOL_VERSION@">5.13.1</token>
6 </macros> 5 </macros>
7 <requirements> 6 <expand macro="requirements"/>
8 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
11 #if str($input_type_conditional.input_type) == "sbml": 8 #if str($input_type_conditional.input_type) == "sbml":
12 #set input_folder="tmp_folder" 9 #set input_folder="tmp_folder"
13 mkdir -p '$input_folder' && 10 mkdir -p '$input_folder' &&
14 #for $input in $input_type_conditional.input_sbml.keys(): 11 #for $input in $input_type_conditional.input_sbml.keys():
38 <outputs> 35 <outputs>
39 <data name="html_file" format="html" label="Pathways HTML Report"/> 36 <data name="html_file" format="html" label="Pathways HTML Report"/>
40 </outputs> 37 </outputs>
41 <tests> 38 <tests>
42 <test> 39 <test>
43 <!-- test 1: check if identical html output is produced (tar input) --> 40 <!-- test 1: check if identical html output is produced (tar input) -->
44 <conditional name="input_type_conditional"> 41 <conditional name="input_type_conditional">
45 <param name="input_type" value="tar"/> 42 <param name="input_type" value="tar"/>
46 <param name="input_tar" value="input_rpSBML.tar" /> 43 <param name="input_tar" value="input_rpSBML.tar" />
47 </conditional> 44 </conditional>
48 <output name="html_file" file="rpreport_output.html" compare="diff"/> 45 <output name="html_file" file="rpreport_output.html" compare="diff"/>
66 63
67 Output 64 Output
68 ------ 65 ------
69 66
70 * **Pathways HTML Report**: Pathways HTML Report 67 * **Pathways HTML Report**: Pathways HTML Report
71
72 Project Links
73 ---------------------
74
75 * `GitHub <https://github.com/brsynth/rptools>`_
76
77 Acknowledgments
78 ---------------
79
80 * Thomas Duigou
81 * Joan Hérisson
82
83 Licence
84 -------
85
86 `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_
87 ]]></help> 68 ]]></help>
88 <creator> 69 <expand macro="creator"/>
89 <person givenName="Olivier" familyName="Telle" email="olivier.telle@inrae.fr" /> 70 <citations>
90 </creator> 71 <citation type="doi">10.1038/s41467-022-32661-x</citation>
72 </citations>
91 </tool> 73 </tool>