Mercurial > repos > tduigou > sbml2sbol
diff test-data/sbol_lycopene_output2.xml @ 2:9b3279f37e41 draft
planemo upload for repository https://github.com/neilswainston/SbmlToSbol commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
author | tduigou |
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date | Mon, 01 May 2023 01:31:11 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sbol_lycopene_output2.xml Mon May 01 01:31:11 2023 +0000 @@ -0,0 +1,1794 @@ +<?xml version="1.0" ?> +<rdf:RDF xmlns:sys-bio="http://sys-bio.org#" xmlns:sbol="http://sbols.org/v2#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:prov="http://www.w3.org/ns/prov#"> + <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_rbs/1"> + <sbol:displayId>P21688_30000_rbs</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_rbs"/> + <sbol:role rdf:resource="http://identifiers.org/so/SO:0000139"/> + <sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/> + <sbol:version>1</sbol:version> + </sbol:ComponentDefinition> + <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/1"> + <sbol:displayId>P21688_20000_gene</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene"/> + <sbol:role rdf:resource="http://identifiers.org/so/SO:0000704"/> + <sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/> + <sbol:type rdf:resource="http://identifiers.org/so/SO:0000987"/> + <sbol:version>1</sbol:version> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/rxn_3_5_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_5_prime_assembly/1"/> + <sbol:displayId>rxn_3_5_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/rxn_3_5_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_rbs_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_rbs/1"/> + <sbol:displayId>P21688_20000_rbs_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_rbs_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_cds_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_cds/1"/> + <sbol:displayId>P21688_20000_cds_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_cds_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/rxn_3_3_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_3_prime_assembly/1"/> + <sbol:displayId>rxn_3_3_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/rxn_3_3_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:sequenceConstraint> + <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/constraint_0/1"> + <sbol:displayId>constraint_0</sbol:displayId> + <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_rbs_0/1"/> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/constraint_0"/> + <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> + <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/rxn_3_5_prime_assembly_0/1"/> + <sbol:version>1</sbol:version> + </sbol:SequenceConstraint> + </sbol:sequenceConstraint> + <sbol:sequenceConstraint> + <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/constraint_1/1"> + <sbol:displayId>constraint_1</sbol:displayId> + <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_cds_0/1"/> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/constraint_1"/> + <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> + <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_rbs_0/1"/> + <sbol:version>1</sbol:version> + </sbol:SequenceConstraint> + </sbol:sequenceConstraint> + <sbol:sequenceConstraint> + <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/constraint_2/1"> + <sbol:displayId>constraint_2</sbol:displayId> + <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/rxn_3_3_prime_assembly_0/1"/> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/constraint_2"/> + <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> + <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_gene/P21688_20000_cds_0/1"/> + <sbol:version>1</sbol:version> + </sbol:SequenceConstraint> + </sbol:sequenceConstraint> + </sbol:ComponentDefinition> + <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_cds/1"> + <sbol:displayId>P21688_20000_cds</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_20000_cds"/> + <sbol:role rdf:resource="http://identifiers.org/so/SO:0000316"/> + <sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/> + <sbol:version>1</sbol:version> + </sbol:ComponentDefinition> + <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/1"> + <sbol:displayId>P21688_30000_gene</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene"/> + <sbol:role rdf:resource="http://identifiers.org/so/SO:0000704"/> + <sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/> + <sbol:type rdf:resource="http://identifiers.org/so/SO:0000987"/> + <sbol:version>1</sbol:version> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/rxn_3_5_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_5_prime_assembly/1"/> + <sbol:displayId>rxn_3_5_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/rxn_3_5_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_rbs_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_rbs/1"/> + <sbol:displayId>P21688_30000_rbs_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_rbs_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_cds_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_cds/1"/> + <sbol:displayId>P21688_30000_cds_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_cds_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/rxn_3_3_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_3_prime_assembly/1"/> + <sbol:displayId>rxn_3_3_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/rxn_3_3_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:sequenceConstraint> + <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/constraint_0/1"> + <sbol:displayId>constraint_0</sbol:displayId> + <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_rbs_0/1"/> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/constraint_0"/> + <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> + <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/rxn_3_5_prime_assembly_0/1"/> + <sbol:version>1</sbol:version> + </sbol:SequenceConstraint> + </sbol:sequenceConstraint> + <sbol:sequenceConstraint> + <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/constraint_1/1"> + <sbol:displayId>constraint_1</sbol:displayId> + <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_cds_0/1"/> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/constraint_1"/> + <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> + <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_rbs_0/1"/> + <sbol:version>1</sbol:version> + </sbol:SequenceConstraint> + </sbol:sequenceConstraint> + <sbol:sequenceConstraint> + <sbol:SequenceConstraint rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/constraint_2/1"> + <sbol:displayId>constraint_2</sbol:displayId> + <sbol:object rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/rxn_3_3_prime_assembly_0/1"/> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/constraint_2"/> + <sbol:restriction rdf:resource="http://sbols.org/v2#precedes"/> + <sbol:subject rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21688_30000_gene/P21688_30000_cds_0/1"/> + <sbol:version>1</sbol:version> + </sbol:SequenceConstraint> + </sbol:sequenceConstraint> + </sbol:ComponentDefinition> + <sbol:ComponentDefinition rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/1"> + <sbol:displayId>P21683_30000_gene</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene"/> + <sbol:role rdf:resource="http://identifiers.org/so/SO:0000704"/> + <sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/> + <sbol:type rdf:resource="http://identifiers.org/so/SO:0000987"/> + <sbol:type rdf:resource="http://identifiers.org/so/SO:0000987"/> + <sbol:type rdf:resource="http://identifiers.org/so/SO:0000987"/> + <sbol:version>1</sbol:version> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_1_5_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_1_5_prime_assembly/1"/> + <sbol:displayId>rxn_1_5_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_1_5_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_rbs_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_rbs/1"/> + <sbol:displayId>P21683_30000_rbs_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_rbs_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_cds_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_cds/1"/> + <sbol:displayId>P21683_30000_cds_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_cds_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_1_3_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_1_3_prime_assembly/1"/> + <sbol:displayId>rxn_1_3_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_1_3_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_2_5_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_2_5_prime_assembly/1"/> + <sbol:displayId>rxn_2_5_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_2_5_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_rbs_1/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_rbs/1"/> + <sbol:displayId>P21683_30000_rbs_1</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_rbs_1"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_cds_1/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_cds/1"/> + <sbol:displayId>P21683_30000_cds_1</sbol:displayId> + <sbol:persistentIdentity 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rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_3_5_prime_assembly_0/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/rxn_3_5_prime_assembly/1"/> + <sbol:displayId>rxn_3_5_prime_assembly_0</sbol:displayId> + <sbol:persistentIdentity rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/rxn_3_5_prime_assembly_0"/> + <sbol:roleIntegration rdf:resource="http://sbols.org/v2#mergeRoles"/> + <sbol:version>1</sbol:version> + </sbol:Component> + </sbol:component> + <sbol:component> + <sbol:Component rdf:about="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_gene/P21683_30000_rbs_2/1"> + <sbol:access rdf:resource="http://sbols.org/v2#public"/> + <sbol:definition rdf:resource="http://liverpool.ac.uk/ComponentDefinition/P21683_30000_rbs/1"/> + <sbol:displayId>P21683_30000_rbs_2</sbol:displayId> + <sbol:persistentIdentity 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