# HG changeset patch
# User tduigou
# Date 1681804301 0
# Node ID 529ee7dc1be9fe99f170e2cde7ccf8bfe28e5078
# Parent  38a0feb2e79d274c0df0b9407cfa0f5324919fd0
planemo upload commit a452ea11b96167cb1a683a1e9eea01a62840e547

diff -r 38a0feb2e79d -r 529ee7dc1be9 README.md
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+# sbol-converter -- Convert between SBOL3 and other genetic design formats.
+
+The open-source software package sbol-converter is available here : https://github.com/SynBioDex/SBOL-utilities
+
+## How to run sbol-converter wrapper tests
+
+In order to execute tests on sbol-converter wrapper, you need to:
+
+  - Connect to your galaxy instance in interactive mode:
+
+  ```bash
+    docker exec -it -u root galaxy_galaxy_1 bash
+  ```
+  - Copy all the contents of `test-data` folder into your own test-data directory which is located in your local galaxy instance : `/galaxy/test-data`. It contains all the input files and expected output files needed for the tests.
+
+  - Install Planemo:
+  You can see here the documentation for Planemo Installation : https://planemo.readthedocs.io/en/latest/installation.html
+  Note that they recommand to install Planemo by setting up a virtual environment:
+
+  ```bash
+  python3 -m venv planemo
+  . planemo/bin/activate
+  pip install -U planemo
+  ```
+
+  - run the tests:
+
+  ```bash
+  planemo test --conda_channels conda-forge,bioconda --conda_debug tools/synbiocad-galaxy-wrappers/sbol-converter/wrap.xml
+  ```
+
+  You can also specify your data test directory with the following option: `--test_data DIRECTORY_DATA_TEST`
+
+  IMPORTANT: Maybe you will need to remove CONDA from your PATH for the command `planemo test` to run correctly. To do that, you can edit this file `~/.bashrc`, comment this line `PATH="/root/anaconda3/bin:$PATH"` and save changes.
+
+  Planemo will output an html test summary `tool_test_output.html`.
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