Mercurial > repos > tduigou > selenzy
view test-data/uniprod_ids_out.xml @ 3:be121e7d0c9d draft default tip
planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
| author | tduigou |
|---|---|
| date | Tue, 23 May 2023 14:17:15 +0000 |
| parents | 34a9d136a5bf |
| children |
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<?xml version="1.0" encoding="UTF-8"?> <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false"> <model metaid="ab7a7ab71c6ccfe1bb89180d9a6fb504a8ea4784c1ace396ce99cb6892d1b81e" id="RP_model_003_0261" name="003_0261" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true"> <listOfCompartments> <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/> <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/> <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/> <rdf:li rdf:resource="http://identifiers.org/seed/c"/> <rdf:li rdf:resource="http://identifiers.org/seed/c0"/> <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/> <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> </compartment> </listOfCompartments> <listOfSpecies> <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description 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</annotation> </species> <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46"> <bqbiol:is> <rdf:Bag/> </bqbiol:is> </rdf:Description> <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:smiles 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<brsynth:value value="162.18254376952495"/> <brsynth:error value="12.808033567928218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG0_prime> <brsynth:thermo_dGm_prime> <brsynth:value value="162.18254376952495"/> <brsynth:error value="12.808033567928218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dGm_prime> <brsynth:thermo_dG_prime> <brsynth:value value="162.18254376952495"/> <brsynth:error value="12.808033567928218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG_prime> <brsynth:thermo_dG> <brsynth:value value="-27.202610383152432"/> <brsynth:error value="12.808033567928218"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> <listOfReactants> <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/> <speciesReference species="MNXM35" stoichiometry="4" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference species="MNXM24" stoichiometry="4" constant="true"/> <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/> </listOfProducts> </reaction> </listOfReactions> <groups:listOfGroups> <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> <brsynth:fba_biomass> <brsynth:value value="0.8769972144269784"/> <brsynth:units value="gDW / gDW / hour"/> </brsynth:fba_biomass> <brsynth:fba_fraction> <brsynth:value value="0.4741875610167627"/> <brsynth:units value="milimole / gDW / hour"/> </brsynth:fba_fraction> <brsynth:thermo_dG0_prime> <brsynth:value value="-28.507609605022708"/> <brsynth:error value="19.469504383090346"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG0_prime> <brsynth:thermo_dGm_prime> <brsynth:value value="-62.737284674464775"/> <brsynth:error value="19.469504383090346"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dGm_prime> <brsynth:thermo_dG_prime> <brsynth:value value="-28.507609605022708"/> <brsynth:error value="19.469504383090346"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG_prime> <brsynth:thermo_dG> <brsynth:value value="-1554.6728925721447"/> <brsynth:error value="19.469504383090346"/> <brsynth:units value="kilojoule / mole"/> </brsynth:thermo_dG> <brsynth:global_score value="0.9863117098808288"/> </brsynth:brsynth> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="rxn_1"/> <groups:member groups:idRef="rxn_2"/> <groups:member groups:idRef="rxn_3"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="CMPD_0000000003"/> <groups:member groups:idRef="CMPD_0000000001"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM34"/> <groups:member groups:idRef="CMPD_0000000003"/> <groups:member groups:idRef="TARGET_0000000001"/> <groups:member groups:idRef="CMPD_0000000001"/> <groups:member groups:idRef="MNXM83"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM24"/> <groups:member groups:idRef="MNXM11"/> <groups:member groups:idRef="MNXM35"/> </groups:listOfMembers> </groups:group> <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM34"/> <groups:member groups:idRef="MNXM11"/> <groups:member groups:idRef="MNXM83"/> </groups:listOfMembers> </groups:group> <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM24"/> <groups:member groups:idRef="MNXM35"/> </groups:listOfMembers> </groups:group> <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8"> <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> </rdf:BRSynth> </rdf:RDF> </annotation> <groups:listOfMembers> <groups:member groups:idRef="MNXM24"/> <groups:member groups:idRef="TARGET_0000000001"/> <groups:member groups:idRef="MNXM35"/> </groups:listOfMembers> </groups:group> </groups:listOfGroups> </model> </sbml>