Mercurial > repos > tduigou > seq_from_db

changeset 3:46f629f79f55 draft default tip

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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Tue, 06 Jan 2026 11:48:06 +0000
parents 11a3752feb0a
children
files seq_form_db.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/seq_form_db.xml	Wed Oct 15 12:33:41 2025 +0000
+++ b/seq_form_db.xml	Tue Jan 06 11:48:06 2026 +0000
@@ -15,7 +15,7 @@
         python '$__tool_directory__/get_db_info.py'
             --input '$input'
             --use_json_paramers '$json_use.use_json_paramers'
-            #if not $json_use.use_json_paramers:
+            #if $json_use.use_json_paramers=='false':
                 --sequence_column '$json_use.sequence_column'
                 --annotation_columns '$json_use.annotation_columns'
                 --db_uri '$json_use.db_uri' 
@@ -30,7 +30,10 @@
     <inputs> 
         <param name="input" type="data" format="csv" label="Input CSV File" />
         <conditional name="json_use">
-            <param name="use_json_paramers" type="boolean" checked='false' label="Use parameters from JSON" help="extract parameters from json file" />
+            <param name="use_json_paramers" type="select" checked='false' label="Use parameters from JSON" help="extract parameters from json file">
+                <option value="true">Get Parameters From JSON</option>
+                <option value="false" selected="true">Set Parameters Manually</option>
+            </param>
             <when value="false">
                 <param name="table" type="text" label="DB Table Name" optional="false" />
                 <param name="sequence_column" type="text" label="DB Column Contains Sequence For ganbank File" optional="false" />