Mercurial > repos > tduigou > seq_to_db

annotate test-data/p6_Nt-IgKLsequence.gb @ 2:dad2c4c3450a draft default tip

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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
author tduigou
date Wed, 23 Jul 2025 09:44:33 +0000
parents 9f845ccb1a9f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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1 LOCUS . 1886 bp DNA UNK 01-JAN-1980
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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2 DEFINITION .
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3 ACCESSION <unknown id>
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4 VERSION <unknown id>
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5 KEYWORDS .
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6 SOURCE .
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7 ORGANISM .
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8 .
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9 FEATURES Location/Qualifiers
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10 terminator 392..419
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11 /note="T7Te terminator"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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12 /note="phage T7 early transcription terminator"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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13 rep_origin complement(431..1018)
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14 /direction=LEFT
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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15 /note="ori"
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16 /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
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17 replication"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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18 terminator 1040..1069
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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19 /note="T3Te terminator"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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20 /note="phage T3 early transcription terminator"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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21 misc_feature 1143..1148
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22 /note="BsmBI"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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23 source 5..1149
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24 /source="Exported"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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25 misc_feature 1154..1165
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26 /note="KozaK"
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27 CDS 1162..1164
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28 /codon_start=1
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29 /note="ATG"
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30 /translation="M"
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31 CDS 1165..1224
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32 /codon_start=1
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33 /note="Ig-kappa leader"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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34 /product="leader sequence from mouse immunoglobulin kappa
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35 light chain"
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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36 /translation="ETDTLLLWVLLLWVPGSTGD"
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37 source 1154..1226
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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38 /source="Exported"
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39 misc_feature complement(1232..1237)
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40 /note="BsmBI"
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41 terminator 1304..1335
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42 /note="tonB terminator"
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43 /note="bidirectional E. coli tonB-P14 transcription
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44 terminator"
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45 promoter 1336..1438
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46 /note="cat promoter"
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47 /note="promoter of the E. coli cat gene"
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48 source 1231..1886
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49 /source="Exported"
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50 ORIGIN
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51 1 ctcaggcgca atcacgaatg aataacggtt tggttggtgc gagtgatttt gatgacgagc
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52 61 gtaatggctg gcctgttgaa caagtctgga aagaaatgca taagcttttg ccattctcac
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53 121 cggattcagt cgtcactcat ggtgatttct cacttgataa ccttattttt gacgagggga
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54 181 aattaatagg ttgtattgat gttggacgag tcggaatcgc agaccgatac caggatcttg
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55 241 ccatcctatg gaactgcctc ggtgagtttt ctccttcatt acagaaacgg ctttttcaaa
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56 301 aatatggtat tgataatcct gatatgaata aattgcagtt tcacttgatg ctcgatgagt
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57 361 ttttctaatg agggcccaaa tgtaatcacc tggctcacct tcgggtgggc ctttctgcgt
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58 421 tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgatgctcaa
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59 481 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct
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60 541 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc
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61 601 cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg
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62 661 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct
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63 721 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag
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64 781 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga
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65 841 agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga
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66 901 agccagttac ctcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg
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67 961 tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga
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68 1021 agatcctttg attttctacc gaagaaaggc ccacccgtga aggtgagcca gtgagttgat
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69 1081 tgcagtccag ttacgctgga gtctgaggct cgtcctgaat gatatcaagc ttgaattcgt
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70 1141 tacgtctcgc cagccgccac catggaaaca gacacactgc tgctatgggt actgctgctc
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71 1201 tgggttccag gttccactgg tgacagcagc cgagacgaag acgaattctc tagatatcgc
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72 1261 tcaatactga ccatttaaat catacctgac ctccatagca gaaagtcaaa agcctccgac
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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73 1321 cggaggcttt tgacttgatc ggcacgtaag aggttccaac tttcaccata atgaaataag
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74 1381 atcactaccg ggcgtatttt ttgagttatc gagattttca ggagctaagg aagctaaaat
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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75 1441 gagccatatt caacgggaaa cgtcttgctc gaggccgcga ttaaattcca acatggatgc
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76 1501 tgatttatat gggtataaat gggctcgcga taatgtcggg caatcaggtg cgacaatcta
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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77 1561 tcgattgtat gggaagcccg atgcgccaga gttgtttctg aaacatggca aaggtagcgt
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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78 1621 tgccaatgat gttacagatg agatggtcag gctaaactgg ctgacggaat ttatgcctct
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79 1681 tccgaccatc aagcatttta tccgtactcc tgatgatgca tggttactca ccactgcgat
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80 1741 cccagggaaa acagcattcc aggtattaga agaatatcct gattcaggtg aaaatattgt
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81 1801 tgatgcgctg gcagtgttcc tgcgccggtt gcattcgatt cctgtttgta attgtccttt
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82 1861 taacggcgat cgcgtatttc gtctcg
9f845ccb1a9f planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
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83 //