Mercurial > repos > tduigou > straindesign_analyzing_model

comparison analyzing-model.xml @ 3:830c96cbdd0d draft default tip

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planemo upload for repository https://github.com/brsynth/straindesign commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Tue, 06 Jan 2026 11:49:10 +0000
parents 9a741be08e6f
children
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2:9a741be08e6f 3:830c96cbdd0d
55 <test> 55 <test>
56 <!-- test 2 --> 56 <!-- test 2 -->
57 <param name="model" ftype="sbml" value="iAF1260.xml.gz"/> 57 <param name="model" ftype="sbml" value="iAF1260.xml.gz"/>
58 <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" /> 58 <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" />
59 <param name="target_rxn_id" value="EX_tyrp_e" /> 59 <param name="target_rxn_id" value="EX_tyrp_e" />
60 <param name="substrate_rxn_id" value="EX_glc__D_e" /> 60 <param name="substrate_cond|substrate_param" value="yes" />
61 <param name="substrate_cond|substrate_rxn_id" value="EX_glc__D_e" />
61 <output name="output_png" ftype="png"> 62 <output name="output_png" ftype="png">
62 <assert_contents> 63 <assert_contents>
63 <has_size value="30000" delta="10000"/> 64 <has_size value="30000" delta="10000"/>
64 </assert_contents> 65 </assert_contents>
65 </output> 66 </output>
68 <!-- test 3 --> 69 <!-- test 3 -->
69 <param name="model" ftype="sbml" value="iAF1260.xml.gz"/> 70 <param name="model" ftype="sbml" value="iAF1260.xml.gz"/>
70 <param name="pathway" ftype="sbml" value="butanol.xml" /> 71 <param name="pathway" ftype="sbml" value="butanol.xml" />
71 <param name="medium" ftype="tabular" value="butanol.tsv" /> 72 <param name="medium" ftype="tabular" value="butanol.tsv" />
72 <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" /> 73 <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" />
73 <param name="substrate_rxn_id" value="EX_glc__D_e" /> 74 <param name="substrate_cond|substrate_param" value="yes" />
75 <param name="substrate_cond|substrate_rxn_id" value="EX_glc__D_e" />
74 <param name="target_rxn_id" value="EX_1btol_e" /> 76 <param name="target_rxn_id" value="EX_1btol_e" />
75 <output name="output_png" ftype="png"> 77 <output name="output_png" ftype="png">
76 <assert_contents> 78 <assert_contents>
77 <has_size value="30000" delta="10000"/> 79 <has_size value="30000" delta="10000"/>
78 </assert_contents> 80 </assert_contents>