Mercurial > repos > tduigou > straindesign_analyzing_model

diff analyzing-model.xml @ 3:830c96cbdd0d draft default tip

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planemo upload for repository https://github.com/brsynth/straindesign commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Tue, 06 Jan 2026 11:49:10 +0000
parents 9a741be08e6f
children
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--- a/analyzing-model.xml	Tue Jul 23 19:26:16 2024 +0000
+++ b/analyzing-model.xml	Tue Jan 06 11:49:10 2026 +0000
@@ -57,7 +57,8 @@
             <param name="model" ftype="sbml" value="iAF1260.xml.gz"/>
             <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" />
             <param name="target_rxn_id" value="EX_tyrp_e" />
-            <param name="substrate_rxn_id" value="EX_glc__D_e" />
+            <param name="substrate_cond|substrate_param" value="yes" />
+            <param name="substrate_cond|substrate_rxn_id" value="EX_glc__D_e" />
             <output name="output_png" ftype="png">
                 <assert_contents>
                     <has_size value="30000" delta="10000"/>
@@ -70,7 +71,8 @@
             <param name="pathway" ftype="sbml" value="butanol.xml" />
             <param name="medium" ftype="tabular" value="butanol.tsv" />
             <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" />
-            <param name="substrate_rxn_id" value="EX_glc__D_e" />
+            <param name="substrate_cond|substrate_param" value="yes" />
+            <param name="substrate_cond|substrate_rxn_id" value="EX_glc__D_e" />
             <param name="target_rxn_id" value="EX_1btol_e" />
             <output name="output_png" ftype="png">
                 <assert_contents>