Mercurial > repos > tduigou > straindesign_simulate_deletion

annotate test-data/butanol.xml @ 2:6b3e0996185f draft default tip

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planemo upload for repository https://github.com/brsynth/straindesign commit 628dbf7f95517f13542059ac4a9de58da440f1c6
author tduigou
date Tue, 23 Jul 2024 19:26:22 +0000
parents 14747c55330c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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3 <model metaid="meta_butanol" id="butanol" fbc:strict="true">
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4 <listOfUnitDefinitions>
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5 <unitDefinition id="mmol_per_gDW_per_hr">
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6 <listOfUnits>
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7 <unit kind="mole" exponent="1" scale="-3" multiplier="1"/>
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8 <unit kind="gram" exponent="-1" scale="0" multiplier="1"/>
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9 <unit kind="second" exponent="-1" scale="0" multiplier="3600"/>
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10 </listOfUnits>
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11 </unitDefinition>
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12 </listOfUnitDefinitions>
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13 <fbc:listOfObjectives fbc:activeObjective="obj">
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14 <fbc:objective fbc:id="obj" fbc:type="maximize">
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15 <fbc:listOfFluxObjectives>
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16 <fbc:fluxObjective fbc:reaction="R_EX_1btol_e" fbc:coefficient="0.5"/>
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17 </fbc:listOfFluxObjectives>
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18 </fbc:objective>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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19 </fbc:listOfObjectives>
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20 <listOfCompartments>
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21 <compartment id="c" name="cytosol" constant="true"/>
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22 <compartment id="p" name="periplasm" constant="true"/>
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23 <compartment id="e" name="extracellular space" constant="true"/>
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24 </listOfCompartments>
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25 <listOfSpecies>
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26 <species metaid="meta_M_co2_e" sboTerm="SBO:0000247" id="M_co2_e" name="CO2 CO2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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27 <annotation>
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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29 <rdf:Description rdf:about="#meta_M_co2_e">
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30 <bqbiol:is>
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31 <rdf:Bag>
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32 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
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33 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:CARBON-DIOXIDE"/>
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34 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:23011"/>
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35 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3283"/>
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36 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48829"/>
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37 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16526"/>
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38 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13283"/>
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39 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13285"/>
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40 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13284"/>
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41 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13282"/>
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42 <rdf:li rdf:resource="https://identifiers.org/envipath/650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3"/>
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43 <rdf:li rdf:resource="https://identifiers.org/envipath/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"/>
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44 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01967"/>
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45 <rdf:li rdf:resource="https://identifiers.org/inchi_key/CURLTUGMZLYLDI-UHFFFAOYSA-N"/>
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46 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00011"/>
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47 <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D00004"/>
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48 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM13"/>
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49 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/29376"/>
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50 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668565"/>
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51 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/189480"/>
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52 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132345"/>
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53 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113528"/>
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54 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1237009"/>
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55 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/159751"/>
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56 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/389536"/>
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57 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/159942"/>
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58 <rdf:li rdf:resource="https://identifiers.org/sabiork/1266"/>
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59 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00011"/>
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60 </rdf:Bag>
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61 </bqbiol:is>
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62 </rdf:Description>
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63 </rdf:RDF>
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64 </annotation>
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65 </species>
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66 <species metaid="meta_M_glc__D_e" sboTerm="SBO:0000247" id="M_glc__D_e" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
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67 <annotation>
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68 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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69 <rdf:Description rdf:about="#meta_M_glc__D_e">
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70 <bqbiol:is>
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71 <rdf:Bag>
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72 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/>
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73 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:Glucopyranose"/>
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74 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:12965"/>
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75 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:20999"/>
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76 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/>
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77 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17634"/>
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78 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/>
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79 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06564"/>
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80 <rdf:li rdf:resource="https://identifiers.org/inchi_key/WQZGKKKJIJFFOK-GASJEMHNSA-N"/>
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81 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/>
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82 <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D00009"/>
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83 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/>
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84 <rdf:li rdf:resource="https://identifiers.org/sabiork/1406"/>
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85 <rdf:li rdf:resource="https://identifiers.org/sabiork/1407"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
86 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd26821"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
87 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00027"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
88 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
89 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
90 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
91 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
92 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
93 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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94 <species metaid="meta_M_b2coa_c" sboTerm="SBO:0000247" id="M_b2coa_c" name="Crotonoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
95 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
96 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
97 <rdf:Description rdf:about="#meta_M_b2coa_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
98 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
99 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
100 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/b2coa"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
101 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:CROTONYL-COA"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
102 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3928"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
103 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11531"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
104 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15473"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
105 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36926"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
106 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57332"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
107 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:23408"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
108 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14031"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
109 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14032"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
110 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13921"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff changeset
111 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:41612"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff changeset
112 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58669"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
113 <rdf:li rdf:resource="https://identifiers.org/envipath/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c0e5f008-6d8b-4b94-a265-03d19ff197f4"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
114 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB62466"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
115 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02009"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
116 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59627"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
117 <rdf:li rdf:resource="https://identifiers.org/inchi_key/KFWWCMJSYSSPSK-PAXLJYGASA-J"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
118 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00877"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
119 <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050307"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
120 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM214"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
121 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/71045"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
122 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/77313"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
123 <rdf:li rdf:resource="https://identifiers.org/sabiork/2174"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
124 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00650"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
125 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
126 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
127 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
128 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
129 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
130 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
131 <species metaid="meta_M_btcoa_c" sboTerm="SBO:0000247" id="M_btcoa_c" name="Gamma-butyrobetainyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O17P3S">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
132 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
133 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
134 <rdf:Description rdf:about="#meta_M_btcoa_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
135 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
136 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
137 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btcoa"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
138 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:GAMMA-BUTYROBETAINYL-COA"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
139 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:61513"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
140 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:61517"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
141 <rdf:li rdf:resource="https://identifiers.org/inchi_key/QAMRRBGWSPTAEJ-SVHODSNWSA-K"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
142 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C20749"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
143 <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050321"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
144 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5762"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
145 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd15412"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
146 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
147 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
148 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
149 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
150 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
151 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
152 <species metaid="meta_M_btal_c" sboTerm="SBO:0000247" id="M_btal_c" name="Butanal C4H8O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
153 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
155 <rdf:Description rdf:about="#meta_M_btal_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
156 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
157 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
158 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btal"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
159 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:BUTANAL"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
160 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22938"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
161 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3233"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
162 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15743"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
163 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13923"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
164 <rdf:li rdf:resource="https://identifiers.org/envipath/650babc9-9d68-4b73-9332-11972ca26f7b/compound/242f8a4e-2a91-4c5f-a129-d044d115b969"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
165 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03543"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
166 <rdf:li rdf:resource="https://identifiers.org/inchi_key/ZTQSAGDEMFDKMZ-UHFFFAOYSA-N"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
167 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01412"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
168 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1017"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
169 <rdf:li rdf:resource="https://identifiers.org/sabiork/2281"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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170 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd01011"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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171 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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172 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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173 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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174 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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175 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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176 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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177 <species metaid="meta_M_nad_c" sboTerm="SBO:0000247" id="M_nad_c" name="Deamino-NAD+" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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178 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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179 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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180 <rdf:Description rdf:about="#meta_M_nad_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
181 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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182 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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183 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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184 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:DEAMIDO-NAD"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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185 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14104"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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186 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58437"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
187 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14103"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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188 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4340"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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189 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14105"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
190 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18304"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
191 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:23567"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
192 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01179"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
193 <rdf:li rdf:resource="https://identifiers.org/inchi_key/SENPVEZBRZQVST-HISDBWNOSA-L"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
194 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00857"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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195 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM309"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
196 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/8938090"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
197 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/200499"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
198 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/197256"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
199 <rdf:li rdf:resource="https://identifiers.org/sabiork/1349"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
200 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00638"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
201 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
202 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
203 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
204 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
205 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
206 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
207 <species metaid="meta_M_nadh_c" sboTerm="SBO:0000247" id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
208 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
209 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
210 <rdf:Description rdf:about="#meta_M_nadh_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
211 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
212 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
213 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
214 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:NADH"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
215 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13395"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
216 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:21902"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
217 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7423"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
218 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:44216"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
219 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57945"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
220 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
221 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13396"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
222 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
223 <rdf:li rdf:resource="https://identifiers.org/inchi_key/BOPGDPNILDQYTO-NNYOXOHSSA-L"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
224 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
225 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
226 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/192305"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
227 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/73473"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
228 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/29362"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
229 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194697"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
230 <rdf:li rdf:resource="https://identifiers.org/sabiork/38"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
231 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00004"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
232 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
233 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
234 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff changeset
235 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
236 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
237 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
238 <species metaid="meta_M_h_c" sboTerm="SBO:0000247" id="M_h_c" name="H+" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
239 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
240 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
241 <rdf:Description rdf:about="#meta_M_h_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
242 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
243 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff changeset
244 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
245 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:PROTON"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
246 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5584"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
247 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13357"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
248 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15378"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
249 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10744"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
250 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59597"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
251 <rdf:li rdf:resource="https://identifiers.org/inchi_key/GPRLSGONYQIRFK-UHFFFAOYSA-N"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
252 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
253 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
254 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2000349"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
255 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425978"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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256 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/74722"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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257 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428040"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
258 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/427899"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
259 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428548"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
260 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/156540"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
261 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/70106"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
262 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425969"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
263 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132304"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
264 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668577"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
265 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1470067"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
266 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/163953"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
267 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/193465"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
268 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113529"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
269 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/351626"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
270 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425999"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
271 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194688"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
272 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/374900"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
273 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2872447"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
274 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/372511"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
275 <rdf:li rdf:resource="https://identifiers.org/sabiork/39"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
276 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00067"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
277 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
278 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
279 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
280 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
281 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
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diff changeset
282 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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diff changeset
283 <species metaid="meta_M_h_e" sboTerm="SBO:0000247" id="M_h_e" name="H+" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
284 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
285 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
286 <rdf:Description rdf:about="#meta_M_h_e">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
287 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
288 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
289 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
290 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:PROTON"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
291 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5584"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
292 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13357"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
293 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15378"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
294 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10744"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
295 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59597"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
296 <rdf:li rdf:resource="https://identifiers.org/inchi_key/GPRLSGONYQIRFK-UHFFFAOYSA-N"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
297 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
298 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
299 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2000349"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
300 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425978"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
301 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/74722"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
302 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428040"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
303 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/427899"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
304 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428548"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
305 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/156540"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
306 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/70106"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
307 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425969"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
308 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132304"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
309 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668577"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
310 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1470067"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
311 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/163953"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
312 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/193465"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
313 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113529"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
314 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/351626"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
315 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425999"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
316 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194688"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
317 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/374900"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
318 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2872447"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
319 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/372511"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
320 <rdf:li rdf:resource="https://identifiers.org/sabiork/39"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
321 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00067"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
322 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
323 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
324 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
325 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
326 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
327 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
328 <species metaid="meta_M_h_p" sboTerm="SBO:0000247" id="M_h_p" name="H+" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
329 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
330 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
331 <rdf:Description rdf:about="#meta_M_h_p">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
332 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
333 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
334 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
335 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:PROTON"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
336 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5584"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
337 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13357"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
338 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15378"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
339 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10744"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
340 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59597"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
341 <rdf:li rdf:resource="https://identifiers.org/inchi_key/GPRLSGONYQIRFK-UHFFFAOYSA-N"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
342 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
343 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
344 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2000349"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
345 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425978"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
346 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/74722"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
347 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428040"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
348 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/427899"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
349 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428548"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
350 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/156540"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
351 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/70106"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
352 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425969"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
353 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132304"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
354 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668577"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
355 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1470067"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
356 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/163953"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
357 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/193465"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
358 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113529"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
359 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/351626"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
360 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425999"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
361 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194688"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
362 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/374900"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
363 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2872447"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
364 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/372511"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
365 <rdf:li rdf:resource="https://identifiers.org/sabiork/39"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
366 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00067"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
367 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
368 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
369 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
370 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
371 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
372 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
373 <species metaid="meta_M_1btol_c" id="M_1btol_c" name="butan1ol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H10O">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
374 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
375 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
376 <rdf:Description rdf:about="#meta_M_1btol_c">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
377 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
378 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
379 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22936"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
380 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
381 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
382 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
383 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
384 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
385 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
386 <species metaid="meta_M_1btol_p" id="M_1btol_p" name="butan1ol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H10O">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
387 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
388 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
389 <rdf:Description rdf:about="#meta_M_1btol_p">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
390 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
391 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
392 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22936"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
393 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
394 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
395 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
396 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
397 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
398 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
399 <species metaid="meta_M_1btol_e" id="M_1btol_e" name="butan1ol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H10O">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
400 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
401 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
402 <rdf:Description rdf:about="#meta_M_1btol_e">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
403 <bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
404 <rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
405 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22936"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
406 </rdf:Bag>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
407 </bqbiol:is>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
408 </rdf:Description>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
409 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
410 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
411 </species>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
412 </listOfSpecies>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
413 <listOfParameters>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
414 <parameter constant="true" id="cobra_default_lb" name="cobra default - lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-1000"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
415 <parameter constant="true" id="cobra_default_ub" name="cobra default - ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="1000"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
416 <parameter constant="true" id="cobra_0_bound" name="cobra 0 - bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="0"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
417 </listOfParameters>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
418 <listOfReactions>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
419 <reaction metaid="meta_R_EX_1btol_e" sboTerm="SBO:0000627" id="R_EX_1btol_e" name="butan1ol exchange" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
420 <listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
421 <speciesReference species="M_1btol_e" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
422 </listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
423 </reaction>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
424 <reaction id="R_ButCoaDeh" name="Butyryl-CoA dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
425 <listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
426 <speciesReference species="M_b2coa_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
427 <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
428 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
429 </listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
430 <listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
431 <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
432 <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
433 </listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
434 </reaction>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
435 <reaction id="R_ButanalDeh" name="Butanal dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
436 <listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
437 <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
438 <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
439 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
440 </listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
441 <listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
442 <speciesReference species="M_btal_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
443 <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
444 </listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
445 </reaction>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
446 <reaction id="R_ButanolDeh" name="Butanol dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
447 <listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
448 <speciesReference species="M_btal_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
449 <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
450 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
451 </listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
452 <listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
453 <speciesReference species="M_1btol_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
454 <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
455 </listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
456 </reaction>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
457 <reaction id="R_ButOlTrP" name="1-Butanol transporter (periplasm)" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
458 <listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
459 <speciesReference species="M_1btol_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
460 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
461 </listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
462 <listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
463 <speciesReference species="M_1btol_p" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
464 <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
465 </listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
466 </reaction>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
467 <reaction id="R_ButOlTrE" name="1-Butanol transporter (extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
468 <listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
469 <speciesReference species="M_1btol_p" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
470 </listOfReactants>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
471 <listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
472 <speciesReference species="M_1btol_e" stoichiometry="1" constant="true"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
473 </listOfProducts>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
474 </reaction>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
475 </listOfReactions>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
476 <groups:listOfGroups>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
477 <groups:group metaid="meta_rp_pathway" groups:id="rp_pathway" groups:kind="collection">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
478 <annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
479 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
480 <rdf:BRSynth rdf:about="meta_rp_pathway">
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
481 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
482 </rdf:BRSynth>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
483 </rdf:RDF>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
484 </annotation>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
485 <groups:listOfMembers>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
486 <groups:member groups:idRef="R_ButCoaDeh"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
487 <groups:member groups:idRef="R_ButanalDeh"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
488 <groups:member groups:idRef="R_ButanolDeh"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
489 <groups:member groups:idRef="R_ButOlTrP"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
490 <groups:member groups:idRef="R_ButOlTrE"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
491 <groups:member groups:idRef="R_EX_1btol_e"/>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
492 </groups:listOfMembers>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
493 </groups:group>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
494 </groups:listOfGroups>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
495 </model>
14747c55330c planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff changeset
496 </sbml>