Mercurial > repos > tduigou > straindesign_simulate_deletion

comparison test-data/butanol.xml @ 0:14747c55330c draft

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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
author tduigou
date Mon, 15 May 2023 14:05:52 +0000
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-1:000000000000 0:14747c55330c
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="meta_butanol" id="butanol" fbc:strict="true">
4 <listOfUnitDefinitions>
5 <unitDefinition id="mmol_per_gDW_per_hr">
6 <listOfUnits>
7 <unit kind="mole" exponent="1" scale="-3" multiplier="1"/>
8 <unit kind="gram" exponent="-1" scale="0" multiplier="1"/>
9 <unit kind="second" exponent="-1" scale="0" multiplier="3600"/>
10 </listOfUnits>
11 </unitDefinition>
12 </listOfUnitDefinitions>
13 <fbc:listOfObjectives fbc:activeObjective="obj">
14 <fbc:objective fbc:id="obj" fbc:type="maximize">
15 <fbc:listOfFluxObjectives>
16 <fbc:fluxObjective fbc:reaction="R_EX_1btol_e" fbc:coefficient="0.5"/>
17 </fbc:listOfFluxObjectives>
18 </fbc:objective>
19 </fbc:listOfObjectives>
20 <listOfCompartments>
21 <compartment id="c" name="cytosol" constant="true"/>
22 <compartment id="p" name="periplasm" constant="true"/>
23 <compartment id="e" name="extracellular space" constant="true"/>
24 </listOfCompartments>
25 <listOfSpecies>
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491 <groups:member groups:idRef="R_EX_1btol_e"/>
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496 </sbml>