Mercurial > repos > tduigou > straindesign_simulate_deletion

changeset 3:9320901fec8d draft default tip

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planemo upload for repository https://github.com/brsynth/straindesign commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Tue, 06 Jan 2026 11:49:05 +0000
parents 6b3e0996185f
children
files simulate-deletion.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/simulate-deletion.xml	Tue Jul 23 19:26:22 2024 +0000
+++ b/simulate-deletion.xml	Tue Jan 06 11:49:05 2026 +0000
@@ -72,9 +72,9 @@
             <param name="medium" ftype="tabular" value="butanol.tsv" />
             <param name="biomass_rxn_id" value="BIOMASS_Ec_iAF1260_core_59p81M" />
             <param name="target_rxn_id" value="EX_1btol_e" />
-            <param name="substrate_rxn_id" value="EX_glc__D_e" />
-            <param name="max_time_param" value="yes"/>
-            <param name="max_time" value="5"/>
+            <param name="input_strategy|substrate_rxn_id" value="EX_glc__D_e" />
+            <param name="max_time_cond|max_time_param" value="yes"/>
+            <param name="max_time_cond|max_time" value="5"/>
             <output name="output_tsv" ftype="tabular">
                 <assert_contents>
                     <has_line_matching expression="^reactions\tgenes\tsize\tfva_min\tfva_max\ttarget_flux\tbiomass_flux\tyield\tfitness$"/>