--- a/tool_dependencies.xml	Sun May 07 11:34:09 2017 -0400
+++ b/tool_dependencies.xml	Sun May 07 12:03:26 2017 -0400
@@ -77,19 +77,19 @@
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomeInfoDb_1.6.3.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/annotate_1.48.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.58.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/genefilter_1.52.1.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/zlibbioc_1.16.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.44.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Biostrings_2.38.4.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.28.0.tar.gz</package>
-                    <package>https://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/SummarizedExperiment_1.2.3.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.12.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.36.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.32.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.28.0.tar.gz</package>
-                    <package>http://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/minfi_1.18.6.tar.gz</package>
-                    <package>https://mirrors.ustc.edu.cn/bioc/packages/3.3/bioc/src/contrib/bumphunter_1.12.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Rsamtools_1.22.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicAlignments_1.6.3.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/rtracklayer_1.30.4.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/minfi_1.16.1.tar.gz</package>
+                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package>
                   </action>
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               </install>