--- a/tool_dependencies.xml	Fri May 05 10:13:23 2017 -0400
+++ b/tool_dependencies.xml	Fri May 05 10:39:38 2017 -0400
@@ -33,6 +33,10 @@
                     <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/doRNG_1.6.6.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/DBI_0.6-1.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.10.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/BH_1.62.0-1.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/plogr_0.1-1.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/RSQLite_1.1-2.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.38.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
@@ -44,7 +48,6 @@
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.58.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.28.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.32.0.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.10.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/base64_2.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.50.0.tar.gz</package>
@@ -65,7 +68,6 @@
                     <package>https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.12.0.tar.gz</package>
                     <package>ftp://164.41.45.6/pub/plan/R/src/contrib/beanplot_1.2.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.42.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/MASS_7.3-47.tar.gz</package>