--- a/tool_dependencies.xml	Fri May 05 06:07:14 2017 -0400
+++ b/tool_dependencies.xml	Fri May 05 06:18:26 2017 -0400
@@ -16,19 +16,19 @@
                   <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="R" version="3.2.1" />
                     </repository>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.22.0.tar.gz</package>
+                    <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.14.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.10.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>
-                    <package>https://mirrors.ustc.edu.cn/bioc/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.12.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>
                     <package>https://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/SummarizedExperiment_1.2.3.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.10.0.tar.gz</package>
                     <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.36.1.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.44.0.tar.gz</package>
                     <package>https://bioconductor.riken.jp/packages/3.3/bioc/src/contrib/GenomicRanges_1.24.3.tar.gz</package>
-                    <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.14.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.22.0.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.58.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.28.0.tar.gz</package>
@@ -47,7 +47,6 @@
                     <package>https://cran.r-project.org/src/contrib/XML_3.98-1.7.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/matrixStats_0.52.2.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.38.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/annotate_1.54.0.tar.gz</package>
@@ -79,7 +78,9 @@
                     <package>https://cran.r-project.org/src/contrib/reshape_0.8.6.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.32.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.36.0.tar.gz</package>
+                    <package>http://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/minfi_1.18.6.tar.gz</package>
                     <package>https://mirrors.ustc.edu.cn/bioc/packages/3.3/bioc/src/contrib/bumphunter_1.12.0.tar.gz</package>
+                    <package>https://mirrors.ustc.edu.cn/bioc/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz</package>
                   </action>
               </actions>
               </install>