--- a/tool_dependencies.xml	Fri May 05 06:26:12 2017 -0400
+++ b/tool_dependencies.xml	Fri May 05 06:39:08 2017 -0400
@@ -17,11 +17,12 @@
                       <package name="R" version="3.2.1" />
                     </repository>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.22.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.10.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.12.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.12.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>
                     <package>https://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/SummarizedExperiment_1.2.3.tar.gz</package>