--- a/tool_dependencies.xml	Wed May 10 15:18:17 2017 -0400
+++ b/tool_dependencies.xml	Wed May 10 16:54:37 2017 -0400
@@ -122,15 +122,13 @@
                     <package>https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_2.0.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/RGraphics/RGraphics_2.0-13.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/Archive/rgl/rgl_0.95.1441.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/NMF/NMF_0.20.5.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/png_0.1-7.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/igraph_1.0.1.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/whisker_0.3-2.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/rstudioapi/rstudioapi_0.2.tar.gz</package>
-                    <package>https://cran.rstudio.com/src/contrib/mixOmics_6.1.2.tar.gz</package>
+                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.28.1.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/minfi_1.16.1.tar.gz</package>
                   </action>
               </actions>
               </install>