--- a/tool_dependencies.xml	Sun May 07 12:35:27 2017 -0400
+++ b/tool_dependencies.xml	Sun May 07 14:15:59 2017 -0400
@@ -88,6 +88,17 @@
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/rtracklayer_1.30.4.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package>
+                    <package>https://cran.rstudio.com/bin/windows/contrib/3.5/ggplot2_2.2.1.zip</package>
+                    <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/igraph_1.0.1.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/rgl_0.98.1.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/ellipse_0.3-8.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/corpcor_1.6.9.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/dplyr_0.5.0.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/tidyr_0.6.2.tar.gz</package>
+                    <package>https://cran.rstudio.com/src/contrib/reshape2_1.4.2.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/mixOmics_6.1.2.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/minfi_1.16.1.tar.gz</package>