--- a/tool_dependencies.xml	Sun May 07 18:12:25 2017 -0400
+++ b/tool_dependencies.xml	Sun May 07 18:36:56 2017 -0400
@@ -90,6 +90,10 @@
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/irlba/irlba_1.0.3.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/htmlwidgets/htmlwidgets_0.3.2.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/htmltools/htmltools_0.2.6.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/knitr/knitr_1.8.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/shiny/shiny_0.10.2.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/rgl_0.98.1.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/ellipse_0.3-8.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/corpcor_1.6.9.tar.gz</package>