--- a/tool_dependencies.xml	Fri May 05 05:21:49 2017 -0400
+++ b/tool_dependencies.xml	Fri May 05 05:32:33 2017 -0400
@@ -49,7 +49,7 @@
                     <package>https://cran.r-project.org/src/contrib/XML_3.98-1.7.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/matrixStats_0.52.2.tar.gz</package>
-                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.38.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/annotate_1.54.0.tar.gz</package>
@@ -61,9 +61,9 @@
                     <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/plyr_1.8.4.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/codetools_0.2-15.tar.gz</package>
-                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.18.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.18.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/openssl_0.9.6.tar.gz</package>
-                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.28.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.28.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/RSQLite_1.1-2.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz</package>
@@ -73,13 +73,13 @@
                     <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package>
-                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package>
-                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.2.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.2.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/digest_0.6.12.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.42.0.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/MASS_7.3-47.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/reshape_0.8.6.tar.gz</package>
-                    <package>https://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.32.0.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.32.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.36.0.tar.gz</package>
                   </action>
               </actions>