--- a/tool_dependencies.xml	Sun May 07 06:50:50 2017 -0400
+++ b/tool_dependencies.xml	Sun May 07 07:28:16 2017 -0400
@@ -67,7 +67,6 @@
                     <package>https://cran.r-project.org/src/contrib/mime_0.5.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/curl_2.6.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz</package>
-                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.12.0.tar.gz</package>
                     <package>ftp://164.41.45.6/pub/plan/R/src/contrib/beanplot_1.2.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.42.0.tar.gz</package>
@@ -85,6 +84,7 @@
                     <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.28.0.tar.gz</package>
                     <package>https://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/SummarizedExperiment_1.2.3.tar.gz</package>
+                    <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.12.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.36.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.32.0.tar.gz</package>
                     <package>http://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.28.0.tar.gz</package>