# HG changeset patch # User testtool # Date 1494173006 14400 # Node ID 07898153a83dec35bc7d6287cdb096a93b471db9 # Parent 91527f5eb74ed548b333f0519ffce8e2d6fae8e6 Uploaded diff -r 91527f5eb74e -r 07898153a83d tool_dependencies.xml --- a/tool_dependencies.xml Sun May 07 11:34:09 2017 -0400 +++ b/tool_dependencies.xml Sun May 07 12:03:26 2017 -0400 @@ -77,19 +77,19 @@ http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomeInfoDb_1.6.3.tar.gz http://bioconductor.org/packages/3.2/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz http://bioconductor.org/packages/3.2/bioc/src/contrib/annotate_1.48.0.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.58.0.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.22.0.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/genefilter_1.52.1.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/zlibbioc_1.16.0.tar.gz http://bioconductor.org/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.44.0.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/Biostrings_2.38.4.tar.gz http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.28.0.tar.gz - https://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/SummarizedExperiment_1.2.3.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.12.0.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.36.0.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.32.0.tar.gz - http://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.28.0.tar.gz - http://bioc.ism.ac.jp/packages/3.3/bioc/src/contrib/minfi_1.18.6.tar.gz - https://mirrors.ustc.edu.cn/bioc/packages/3.3/bioc/src/contrib/bumphunter_1.12.0.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/Rsamtools_1.22.0.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicAlignments_1.6.3.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/rtracklayer_1.30.4.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/biomaRt_2.26.1.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/minfi_1.16.1.tar.gz + http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz