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comparison annotatePeak/annotatePeak.xml @ 0:5d70366e7c6f draft

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author testtool
date Mon, 06 Feb 2017 10:53:57 -0500
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1 <tool id="AP" name="annotatePeak" version="1.16.2">
2 <requirements>
3 <requirement type="package" version="3.2.1">R</requirement>
4 </requirements>
5 <stdio>
6 <exit_code range="1:" />
7 </stdio>
8 <command> Rscript $__tool_directory__/annotatePeak.R "$DMR" "$annoPeakTable"</command>
9 <inputs>
10 <param optional="false" format="bed" name="DMR" type="data" value="" help="Bumphunter peaks." label="[required] file">
11 <validator type="empty_field" message="This field is required."/>
12 </param>
13 </inputs>
14 <outputs>
15 <data format="csv" name="annoPeakTable" label="peakAnno.csv"/>
16 </outputs>
17 <tests>
18 <test>
19 <param name="test">
20 <element name="test-data">
21 <collection type="data">
22 <element name="DMR" value="test-data/DMR.bed"/>
23 </collection>
24 </element>
25 </param>
26 <output format="csv" name="annoPeakTable" label="test-data/annoPeakTable.csv"/>
27 </test>
28 </tests>
29 <help>
30 **Description**
31 </help>
32 <citations>
33 DMR
34 </citations>
35 </tool>