Mercurial > repos > testtool > annotate_peak

diff annotatePeak/annotatePeak.R @ 1:92387cb81962 draft

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author testtool
date Sat, 25 Feb 2017 11:18:27 -0500
parents 5d70366e7c6f
children be66730c5c3b
line wrap: on
line diff
--- a/annotatePeak/annotatePeak.R	Mon Feb 06 10:53:57 2017 -0500
+++ b/annotatePeak/annotatePeak.R	Sat Feb 25 11:18:27 2017 -0500
@@ -1,5 +1,6 @@
 require("ChIPseeker", quietly = TRUE)
 require("ChIPpeakAnno", quietly = TRUE)
+require("org.Hs.eg.db", quietly = TRUE)
 options(warn = -1)
 
 args <- commandArgs(trailingOnly = TRUE)
@@ -21,6 +22,6 @@
 
 annotatePeak <-
   as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-
+??org.Hs.eg.db
 
 write.csv(annotatePeak, annoPeakTable, row.names = FALSE)