--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/findDMP/findDMP.xml	Sun Jun 11 17:29:26 2017 -0400
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<tool id="findDMP" name="findDMP" version="1.20.0">
+<requirements>
+<requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
+</requirements>
+<stdio>
+<exit_code range="1:" />
+</stdio>
+  <command> Rscript $__tool_directory__/findDMP.R "$input1" "$input2" "$output" </command>
+  <inputs>
+     <param format="RDdata" name="input1" type="data" label="Genomic Ratio Set" help="e.g. 'GRsetFromGEO tool output'"/>
+     <param format="csv" name="input2" type="data" label="Phenotype Table"
+  help="e.g.'ID Phenotype
+  GSM1255789       OLD
+  GSM1255798       OLD
+  GSM1255778      YOUNG'"/>
+  </inputs>
+  <outputs>
+    <data format="text" type="data" name="output" label="DMP.txt"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="test">
+      <element name="test-data">
+          <collection type="data">
+                <element name="input1" type="data" format="RData" label="test-data/out.RData"> </element>
+                <element name="input2" type="data" format="csv" label="test-data/OLDvsYOUNG.csv"> </element>
+          </collection>
+        </element>
+        </param>
+        <output name="output" type="data" format="text" label="test-data/DMP.txt"/>
+        </test>
+    </tests>
+  <help>
+**What it does**
+Tool finds differentially methylated positions (DMPs) with respect to a phenotype covariate
+**Input**
+GenomicRatioSet object
+Phenotype Table
+**Output**
+Text file containing differentially methylated positions
+  </help>
+  <citations>
+<citation type="doi">10.1093/bioinformatics/btu049</citation>
+  </citations>
+</tool>