|
39
|
1 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
|
|
34
|
2 <description>
|
|
39
|
3 Reading Illumina methylation array data from GEO
|
|
34
|
4 </description>
|
|
|
5 <requirements>
|
|
45
|
6 <requirement type="package" version="3.2.1">R</requirement>
|
|
|
7 <requirement type="package" version="1.16.0">minfi</requirement>
|
|
34
|
8 </requirements>
|
|
|
9 <stdio>
|
|
|
10 <exit_code range="1:" />
|
|
|
11 </stdio>
|
|
|
12 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
|
|
|
13 <inputs>
|
|
39
|
14 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
|
|
34
|
15 </inputs>
|
|
|
16 <outputs>
|
|
|
17 <data format="rdata" name="output" label="GRsetFromGEO.rdata"/>
|
|
|
18 </outputs>
|
|
|
19 <tests>
|
|
|
20 <test>
|
|
|
21 <param name="test">
|
|
39
|
22 <element name="test-data">
|
|
34
|
23 <collection type="data">
|
|
39
|
24 <element name="GSE" value="GSE51547"/>
|
|
34
|
25 </collection>
|
|
39
|
26 </element>
|
|
34
|
27 </param>
|
|
39
|
28 <output format="rdata" name="output" label="test-data/out.Rdata"/>
|
|
34
|
29 </test>
|
|
|
30 </tests>
|
|
|
31 <help>
|
|
39
|
32 **Description**
|
|
34
|
33 </help>
|
|
|
34 <citations>
|
|
39
|
35 GEO
|
|
34
|
36 </citations>
|
|
|
37 </tool>
|
