Mercurial > repos > testtool > geo_data

annotate GRsetFromGEO/GRsetFromGEO.R @ 57:4a5ab32a231c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Fri, 28 Apr 2017 07:45:14 -0400
parents f84cadc1fdd6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
55
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
1 require("minfi", quietly = TRUE)
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
2
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
3 options(warn = -1)
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
4 options("download.file.method"="wget")
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
5
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
6 args <- commandArgs(trailingOnly = TRUE)
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
7 GSE = args[1]
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
8 output = args[2]
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
9
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
10 GRset <- getGenomicRatioSetFromGEO(GSE)
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
11
f84cadc1fdd6 Uploaded
testtool
parents:
diff changeset
12 save(GRset,file = output)