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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
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3 <description>
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4 Reading Illumina methylation array data from GEO
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5 </description>
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6 <macros>
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7 <import>GRsetFromGEO_macros.xml</import>
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8 </macros>
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9 <expand macro="requirements" />
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10 <stdio>
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11 <exit_code range="1:" />
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12 </stdio>
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13 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
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14 <inputs>
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15 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
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16 </inputs>
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17 <outputs>
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18 <data format="RDdata" name="output" label="GRsetFromGEO.RData"/>
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="test">
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23 <element name="test-data">
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24 <collection type="data">
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25 <element name="GSE" value="GSE51547"/>
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26 </collection>
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27 </element>
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28 </param>
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29 <output type="data" format="RData" name="output" label="test-data/out.RData"/>
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30 </test>
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31 </tests>
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32 <help>
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33 **Description**
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34 </help>
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35 <citations>
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36 GEO
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37 </citations>
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38 </tool>
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