Mercurial > repos > testtool > geo_data

annotate GRsetFromGEO/GRsetFromGEO.R @ 56:d4c5ec2d87d5 draft

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author testtool
date Fri, 28 Apr 2017 07:20:30 -0400
parents f84cadc1fdd6
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55
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1 require("minfi", quietly = TRUE)
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2
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3 options(warn = -1)
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4 options("download.file.method"="wget")
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5
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6 args <- commandArgs(trailingOnly = TRUE)
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7 GSE = args[1]
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8 output = args[2]
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9
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10 GRset <- getGenomicRatioSetFromGEO(GSE)
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11
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12 save(GRset,file = output)