|
55
|
1 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
|
|
|
2 <description>
|
|
|
3 Reading Illumina methylation array data from GEO
|
|
|
4 </description>
|
|
|
5 <requirements>
|
|
|
6 <requirement type="package" version="3.2.1">R</requirement>
|
|
|
7 </requirements>
|
|
|
8 <stdio>
|
|
|
9 <exit_code range="1:" />
|
|
|
10 </stdio>
|
|
|
11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
|
|
|
12 <inputs>
|
|
|
13 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
|
|
|
14 </inputs>
|
|
|
15 <outputs>
|
|
|
16 <data format="RDdata" name="output" label="GRsetFromGEO.RData"/>
|
|
|
17 </outputs>
|
|
|
18 <tests>
|
|
|
19 <test>
|
|
|
20 <param name="test">
|
|
|
21 <element name="test-data">
|
|
|
22 <collection type="data">
|
|
|
23 <element name="GSE" value="GSE51547"/>
|
|
|
24 </collection>
|
|
|
25 </element>
|
|
|
26 </param>
|
|
|
27 <output type="data" format="RData" name="output" label="test-data/out.RData"/>
|
|
|
28 </test>
|
|
|
29 </tests>
|
|
|
30 <help>
|
|
|
31 **Description**
|
|
|
32 </help>
|
|
|
33 <citations>
|
|
|
34 GEO
|
|
|
35 </citations>
|
|
|
36 </tool>
|
