Mercurial > repos > testtool > geo_data
comparison GRsetFromGEO/GRsetFromGEO.R @ 12:0631845b906d draft
Uploaded
| author | testtool |
|---|---|
| date | Wed, 12 Apr 2017 08:29:45 -0400 |
| parents | |
| children | 9c9e389abef6 |
comparison
equal
deleted
inserted
replaced
| 11:983651783ce9 | 12:0631845b906d |
|---|---|
| 1 require("minfi", quietly = TRUE) | |
| 2 | |
| 3 options(warn = -1) | |
| 4 options("download.file.method"="wget") | |
| 5 | |
| 6 args <- commandArgs(trailingOnly = TRUE) | |
| 7 GSE = args[1] | |
| 8 output = args[2] | |
| 9 | |
| 10 GRset <- getGenomicRatioSetFromGEO(GSE) | |
| 11 | |
| 12 save(GRset,file = output) | |
| 13 | |
| 14 |