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comparison getGEO/getGEO.R @ 69:23e9c26c3334 draft

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author testtool
date Thu, 11 May 2017 11:21:06 -0400
parents fc93085430a8
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68:fc93085430a8 69:23e9c26c3334
1 require("BiocGenerics", quietly = TRUE)
2 require("data.table", quietly = TRUE)
3 require("GEOquery", quietly = TRUE)
4 require("rtracklayer", quietly = TRUE)
5 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
6
1 options("download.file.method.GEOquery"="wget") 7 options("download.file.method.GEOquery"="wget")
2 options(warn = -1) 8 options(warn = -1)
3 9
4 args <- commandArgs(trailingOnly = TRUE) 10 args <- commandArgs(trailingOnly = TRUE)
5 GSMTable = args[1] 11 GSMTable = args[1]