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comparison GRsetFromGEO/GRsetFromGEO.R @ 21:59122070e61d draft

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author testtool
date Wed, 12 Apr 2017 13:20:50 -0400
parents 882e9c8498fa
children 3d281ad15b83
comparison
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20:882e9c8498fa 21:59122070e61d
1 require("minfi", quietly = TRUE)
2
1 options(warn = -1) 3 options(warn = -1)
2 options("download.file.method"="wget") 4 options("download.file.method"="wget")
3 5
4 args <- commandArgs(trailingOnly = TRUE) 6 args <- commandArgs(trailingOnly = TRUE)
5 GSE = args[1] 7 GSE = args[1]
6 output = args[2] 8 output = args[2]
7 9
8 GRset <- minfi::getGenomicRatioSetFromGEO(GSE) 10 GRset <- getGenomicRatioSetFromGEO(GSE)
9 11
10 save(GRset,file = output) 12 save(GRset,file = output)