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comparison GRsetFromGEO/GRsetFromGEO.xml @ 34:59a5237b72a3 draft

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author testtool
date Fri, 14 Apr 2017 09:25:08 -0400
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33:2c799524e1d3 34:59a5237b72a3
1 <tool id="GRset" name="GRsetFromGEO" version="1.16.2">
2 <description>
3 Reading Illumina methylation array data from GEO
4 </description>
5 <requirements>
6 <requirement type="package" version="3.2.1">R</requirement>
7 </requirements>
8 <stdio>
9 <exit_code range="1:" />
10 </stdio>
11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
12 <inputs>
13 <param optional="false" format="txt" name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'">
14 <validator type="empty_field" message="This field is required."/>
15 </param>
16 </inputs>
17 <outputs>
18 <data format="rdata" name="output" label="GRsetFromGEO.rdata"/>
19 </outputs>
20 <tests>
21 <test>
22 <param name="test">
23 <element name="test-data">
24 <collection type="data">
25 <element name="GSE" value="GSE51547"/>
26 </collection>
27 </element>
28 </param>
29 <output format="rdata" name="output" label="test-data/GRsetFromGEO.rdata"/>
30 </test>
31 </tests>
32 <help>
33 **Reading Illumina methylation array data from GEO**
34 </help>
35 <citations>
36 DMR
37 </citations>
38 </tool>