Mercurial > repos > testtool > geo_data
comparison GRsetFromGEO/tool_dependencies.xml @ 47:6133bb91d065 draft
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author | testtool |
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date | Mon, 24 Apr 2017 11:19:52 -0400 |
parents | 591f68d46899 |
children | af3db4a42f9e |
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46:591f68d46899 | 47:6133bb91d065 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool_dependency> | 2 <tool_dependency> |
3 <package name="libcurl" version="7.35"> | 3 <package name="minfi" version="1.16.0"> |
4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 # TODO: |
5 <repository changeset_revision="d0cee75b3e2e" name="package_minfi_1_16_0" owner="nturaga" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | 6 </package> |
6 <package name="R" version="3.2.1"> | 7 <package name="R" version="3.2.1"> |
7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 8 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
8 </package> | |
9 <package name="minfi" version="1.16.0"> | |
10 <install version="1.0"> | |
11 <actions> | |
12 <action type="setup_r_environment"> | |
13 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | |
14 <package name="libcurl" version="7.35" /> | |
15 </repository> | |
16 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
17 <package name="R" version="3.2.1" /> | |
18 </repository> | |
19 <package>https://bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package> | |
20 <package>https://bioarchive.galaxyproject.org/Biobase_2.29.1.tar.gz</package> | |
21 <package>http://bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package> | |
22 <package>http://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.4.8.tar.gz</package> | |
23 <package>https://bioarchive.galaxyproject.org/GenomeInfoDb_1.6.0.tar.gz</package> | |
24 <package>https://bioarchive.galaxyproject.org/zlibbioc_1.16.0.tar.gz</package> | |
25 <package>https://bioarchive.galaxyproject.org/XVector_0.10.0.tar.gz</package> | |
26 <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package> | |
27 <package>https://bioarchive.galaxyproject.org/Biostrings_2.38.0.tar.gz</package> | |
28 <package>https://depot.galaxyproject.org/package/noarch/iterators_1.0.8.tar.gz</package> | |
29 <package>https://depot.galaxyproject.org/package/noarch/foreach_1.4.3.tar.gz</package> | |
30 <package>https://depot.galaxyproject.org/package/noarch/locfit_1.5-9.1.tar.gz</package> | |
31 <package>https://depot.galaxyproject.org/package/noarch/matrixStats_0.14.2.tar.gz</package> | |
32 <package>https://bioarchive.galaxyproject.org/limma_3.26.0.tar.gz</package> | |
33 <package>https://depot.galaxyproject.org/package/noarch/registry_0.3.tar.gz</package> | |
34 <package>https://depot.galaxyproject.org/package/noarch/digest_0.6.9.tar.gz</package> | |
35 <package>https://depot.galaxyproject.org/package/noarch/stringi_1.0-1.tar.gz</package> | |
36 <package>https://depot.galaxyproject.org/package/noarch/magrittr_1.5.tar.gz</package> | |
37 <package>https://depot.galaxyproject.org/package/noarch/stringr_1.0.0.tar.gz</package> | |
38 <package>https://depot.galaxyproject.org/package/noarch/xtable_1.7-4.tar.gz</package> | |
39 <package>https://depot.galaxyproject.org/package/noarch/pkgmaker_0.22.tar.gz</package> | |
40 <package>https://depot.galaxyproject.org/package/noarch/rngtools_1.2.4.tar.gz</package> | |
41 <package>https://depot.galaxyproject.org/package/noarch/doRNG_1.6.tar.gz</package> | |
42 <package>https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz</package> | |
43 <package>https://depot.galaxyproject.org/package/noarch/RSQLite_1.0.0.tar.gz</package> | |
44 <package>https://bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package> | |
45 <package>https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz</package> | |
46 <package>https://depot.galaxyproject.org/package/noarch/RCurl_1.95-4.7.tar.gz</package> | |
47 <package>https://depot.galaxyproject.org/package/noarch/XML_3.98-1.3.tar.gz</package> | |
48 <package>https://depot.galaxyproject.org/package/noarch/lambda.r_1.1.7.tar.gz</package> | |
49 <package>https://depot.galaxyproject.org/package/noarch/futile.options_1.0.0.tar.gz</package> | |
50 <package>https://depot.galaxyproject.org/package/noarch/futile.logger_1.4.1.tar.gz</package> | |
51 <package>https://depot.galaxyproject.org/package/noarch/snow_0.3-13.tar.gz</package> | |
52 <package>https://bioarchive.galaxyproject.org/BiocParallel_1.3.54.tar.gz</package> | |
53 <package>https://bioarchive.galaxyproject.org/Rsamtools_1.22.0.tar.gz</package> | |
54 <package>https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package> | |
55 <package>https://bioarchive.galaxyproject.org/GenomicAlignments_1.6.0.tar.gz</package> | |
56 <package>https://bioarchive.galaxyproject.org/rtracklayer_1.30.0.tar.gz</package> | |
57 <package>https://bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package> | |
58 <package>https://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package> | |
59 <package>https://bioarchive.galaxyproject.org/bumphunter_1.10.0.tar.gz</package> | |
60 <package>https://depot.galaxyproject.org/package/noarch/beanplot_1.2.tar.gz</package> | |
61 <package>https://depot.galaxyproject.org/package/noarch/RColorBrewer_1.1-2.tar.gz</package> | |
62 <package>https://depot.galaxyproject.org/package/noarch/nor1mix_1.2-1.tar.gz</package> | |
63 <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.26.0.tar.gz</package> | |
64 <package>https://www.bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.44.0.tar.gz</package> | |
65 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.32.0.tar.gz</package> | |
66 <package>https://depot.galaxyproject.org/package/noarch/base64_1.1.tar.gz</package> | |
67 <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.12.0.tar.gz</package> | |
68 <package>https://depot.galaxyproject.org/package/noarch/mclust_5.0.2.tar.gz</package> | |
69 <package>https://bioarchive.galaxyproject.org/annotate_1.48.0.tar.gz</package> | |
70 <package>http://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.52.1.tar.gz</package> | |
71 <package>https://depot.galaxyproject.org/package/noarch/Rcpp_0.12.1.tar.gz</package> | |
72 <package>https://depot.galaxyproject.org/package/noarch/plyr_1.8.3.tar.gz</package> | |
73 <package>https://depot.galaxyproject.org/package/noarch/reshape_0.8.5.tar.gz</package> | |
74 <package>https://depot.galaxyproject.org/package/noarch/quadprog_1.5-5.tar.gz</package> | |
75 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package> | |
76 <package>https://depot.galaxyproject.org/package/noarch/colorspace_1.2-6.tar.gz</package> | |
77 <package>https://depot.galaxyproject.org/package/noarch/dichromat_2.0-0.tar.gz</package> | |
78 <package>https://depot.galaxyproject.org/package/noarch/labeling_0.3.tar.gz</package> | |
79 <package>https://depot.galaxyproject.org/package/noarch/munsell_0.4.3.tar.gz</package> | |
80 <package>https://depot.galaxyproject.org/package/noarch/reshape2_1.4.1.tar.gz</package> | |
81 <package>https://depot.galaxyproject.org/package/noarch/gtable_0.2.0.tar.gz</package> | |
82 <package>https://depot.galaxyproject.org/package/noarch/scales_0.4.0.tar.gz</package> | |
83 <package>https://depot.galaxyproject.org/package/noarch/ggplot2_2.1.0.tar.gz</package> | |
84 <package>https://depot.galaxyproject.org/package/noarch/rgl_0.95.1441.tar.gz</package> | |
85 <package>https://depot.galaxyproject.org/package/noarch/ellipse_0.3-8.tar.gz</package> | |
86 <package>https://depot.galaxyproject.org/package/noarch/corpcor_1.6.8.tar.gz</package> | |
87 <package>https://depot.galaxyproject.org/package/noarch/cluster_2.0.4.tar.gz</package> | |
88 <package>https://depot.galaxyproject.org/package/noarch/gridBase_0.4-7.tar.gz</package> | |
89 <package>https://depot.galaxyproject.org/package/noarch/doParallel_1.0.10.tar.gz</package> | |
90 <package>https://depot.galaxyproject.org/package/noarch/NMF_0.20.6.tar.gz</package> | |
91 <package>https://depot.galaxyproject.org/package/noarch/irlba_2.0.0.tar.gz</package> | |
92 <package>https://depot.galaxyproject.org/package/noarch/igraph_1.0.1.tar.gz</package> | |
93 <package>https://depot.galaxyproject.org/package/noarch/mixOmics_5.2.0.tar.gz</package> | |
94 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package> | |
95 <package>https://depot.galaxyproject.org/package/noarch/getopt_1.20.0.tar.gz</package> | |
96 <package>https://bioconductor.org/packages/release/data/experiment/src/contrib/FlowSorted.Blood.450k_1.8.0.tar.gz</package> | |
97 </action> | |
98 </actions> | |
99 </install> | |
100 <readme> | |
101 </readme> | |
102 </package> | 9 </package> |
103 </tool_dependency> | 10 </tool_dependency> |