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comparison GRsetFromGEO/GRsetFromGEO.xml @ 39:925945cca45f draft

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author testtool
date Mon, 24 Apr 2017 09:29:38 -0400
parents baded0f1630d
children 28416ed17e41
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38:baded0f1630d 39:925945cca45f
1 <tool id="GRset" name="GRsetFromGEO" version="1.16.2"> 1 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
2 <description> 2 <description>
3 Reading Illumina methylation array data from GEO 3 Reading Illumina methylation array data from GEO
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="3.2.1">R</requirement> 6 <requirement type="package" version="3.2.1">R</requirement>
7 </requirements> 7 </requirements>
8 <stdio> 8 <stdio>
9 <exit_code range="1:" /> 9 <exit_code range="1:" />
10 </stdio> 10 </stdio>
11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> 11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
12 <inputs> 12 <inputs>
13 <param optional="false" format="txt" name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"> 13 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
14 <validator type="empty_field" message="This field is required."/>
15 </param>
16 </inputs> 14 </inputs>
17 <outputs> 15 <outputs>
18 <data format="rdata" name="output" label="GRsetFromGEO.rdata"/> 16 <data format="rdata" name="output" label="GRsetFromGEO.rdata"/>
19 </outputs> 17 </outputs>
20 <tests> 18 <tests>
21 <test> 19 <test>
22 <param name="test"> 20 <param name="test">
23 <element name="test-data"/> 21 <element name="test-data">
24 <collection type="data"> 22 <collection type="data">
25 <element name="GSE" value="GSE51547"/> 23 <element name="GSE" value="GSE51547"/>
26 </collection> 24 </collection>
25 </element>
27 </param> 26 </param>
28 <output format="rdata" name="output" label="test-data/out.rdata"/> 27 <output format="rdata" name="output" label="test-data/out.Rdata"/>
29 </test> 28 </test>
30 </tests> 29 </tests>
31 <help> 30 <help>
32 **Reading Illumina methylation array data from GEO** 31 **Description**
33 </help> 32 </help>
34 <citations> 33 <citations>
35 DMR 34 GEO
36 </citations> 35 </citations>
37 </tool> 36 </tool>