Mercurial > repos > testtool > geo_data
comparison getGEO/getGEO.xml @ 65:ad054b925eda draft
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author | testtool |
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date | Thu, 11 May 2017 06:31:45 -0400 |
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64:e8ea94f5f273 | 65:ad054b925eda |
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1 <tool id="GEO" name="getGEO" version="1.16.2"> | |
2 <requirements> | |
3 <requirement type= "package" version="0.0.1">450kdependency</requirement> | |
4 <requirement type="package" version="3.2.1">R</requirement> | |
5 </requirements> | |
6 <stdio> | |
7 <exit_code range="1:" /> | |
8 </stdio> | |
9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$protocol" "$platform" "$Data_Table"</command> | |
10 <inputs> | |
11 <param optional="false" format="txt" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> | |
12 <validator type="empty_field" message="This field is required."/> | |
13 </param> | |
14 </inputs> | |
15 <outputs> | |
16 <data format="txt" name="protocol" label="protocol.txt"/> | |
17 <data format="txt" name="platform" label="platform.txt"/> | |
18 <data format="txt" name="Data_Table" label="Data_Table.txt"/> | |
19 </outputs> | |
20 <tests> | |
21 <test> | |
22 <param name="test"> | |
23 <element name="test-data"> | |
24 <collection type="data"> | |
25 <element name="GSMTable" value="test-data/input.txt" /> | |
26 </collection> | |
27 </element> | |
28 </param> | |
29 <output format="txt" name="protocol" label="test-data/protocol.txt"/> | |
30 <output format="txt" name="platform" label="test-data/platform.txt"/> | |
31 <output format="txt" name="Data_Table" label="test-data/Data_Table.txt"/> | |
32 </test> | |
33 </tests> | |
34 <help> | |
35 **Description** | |
36 </help> | |
37 <citations> | |
38 GEO | |
39 </citations> | |
40 </tool> |