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comparison GRsetFromGEO/GRsetFromGEO.xml @ 30:ceced09589d9 draft

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author testtool
date Thu, 13 Apr 2017 12:06:07 -0400
parents 118e636a5f95
children cc4b808cb2ea
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29:118e636a5f95 30:ceced09589d9
1 <tool id="GRset" name="GRsetFromGEO" version="1.16.2"> 1 <tool id="GRset" name="GRsetFromGEO" version="1.16.2">
2 <requirements> 2 <requirements>
3 <requirement name="package_r_3_2_1" type="package" version="3.2.1">R</requirement> 3 <requirement type="R-module" version="1.15.7">minfi</requirement>
4 </requirements> 4 </requirements>
5 <stdio> 5 <stdio>
6 <exit_code range="1:" /> 6 <exit_code range="1:" />
7 </stdio> 7 </stdio>
8 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> 8 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
9 <inputs> 9 <inputs>
10 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> 10 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data type="galaxy.datatypes.binary:RData" name="output" label="GenomicRatioSet.RData"/> 13 <data ftype="RData" name="output" label="GenomicRatioSet.RData"/>
14 </outputs> 14 </outputs>
15 <tests> 15 <tests>
16 <test> 16 <test>
17 <param name="test"> 17 <param name="test">
18 <element name="test-data"> 18 <element name="test-data">
19 <collection type="data"> 19 <collection type="data">
20 <element name="GSE" value="GSE51547"/> 20 <element name="GSE" value="GSE51547"/>
21 </collection> 21 </collection>
22 </element> 22 </element>
23 </param> 23 </param>
24 <output type="galaxy.datatypes.binary:RData" name="output" label="test-data/GenomicRatioSet.RData"/> 24 <output ftype="RData" name="output" label="test-data/GenomicRatioSet.RData"/>
25 </test> 25 </test>
26 </tests> 26 </tests>
27 <help> 27 <help>
28 Reading Illumina methylation array data from GEO 28 Reading Illumina methylation array data from GEO
29 </help> 29 </help>