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comparison GRsetFromGEO/GRsetFromGEO.xml @ 55:f84cadc1fdd6 draft

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author testtool
date Tue, 25 Apr 2017 11:03:34 -0400
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54:7aab6e28c62e 55:f84cadc1fdd6
1 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
2 <description>
3 Reading Illumina methylation array data from GEO
4 </description>
5 <requirements>
6 <requirement type="package" version="3.2.1">R</requirement>
7 </requirements>
8 <stdio>
9 <exit_code range="1:" />
10 </stdio>
11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
12 <inputs>
13 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
14 </inputs>
15 <outputs>
16 <data format="RDdata" name="output" label="GRsetFromGEO.RData"/>
17 </outputs>
18 <tests>
19 <test>
20 <param name="test">
21 <element name="test-data">
22 <collection type="data">
23 <element name="GSE" value="GSE51547"/>
24 </collection>
25 </element>
26 </param>
27 <output type="data" format="RData" name="output" label="test-data/out.RData"/>
28 </test>
29 </tests>
30 <help>
31 **Description**
32 </help>
33 <citations>
34 GEO
35 </citations>
36 </tool>