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comparison getGEO/getGEO.R @ 68:fc93085430a8 draft

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author testtool
date Thu, 11 May 2017 11:16:23 -0400
parents cbc8174bd361
children 23e9c26c3334
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67:5e67fa9f807b 68:fc93085430a8
1 require("BiocGenerics", quietly = TRUE)
2 require("data.table", quietly = TRUE)
3 require("GEOquery", quietly = TRUE)
4 require("rtracklayer", quietly = TRUE)
5 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
6
7 options("download.file.method.GEOquery"="wget") 1 options("download.file.method.GEOquery"="wget")
8 options(warn = -1) 2 options(warn = -1)
9 3
10 args <- commandArgs(trailingOnly = TRUE) 4 args <- commandArgs(trailingOnly = TRUE)
11 GSMTable = args[1] 5 GSMTable = args[1]