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diff GRsetFromGEO/GRsetFromGEO.R @ 42:4987433afb56 draft

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Uploaded
author testtool
date Mon, 24 Apr 2017 10:09:39 -0400
parents 234e990e8e1d
children 660897ee0d12
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line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Mon Apr 24 10:04:18 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Mon Apr 24 10:09:39 2017 -0400
@@ -1,5 +1,7 @@
+require("BiocGenerics", quietly = TRUE)
+require("data.table", quietly = TRUE)
+require("GEOquery", quietly = TRUE)
 require("minfi", quietly = TRUE)
-require("GEOquery", quietly = TRUE)
 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
 
 args <- commandArgs(trailingOnly = TRUE)
@@ -24,7 +26,7 @@
 mergeManifest = FALSE
 i = 1
 
-gset <- getGEO(GSE)
+gset <- GEOquery::getGEO(GSE)
 gset <- gset[[1]]
 
 platform <- annotation(gset)