Mercurial > repos > testtool > geo_data
diff GEO/getGEO.xml @ 7:5231cb49c63b draft
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author | testtool |
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date | Mon, 20 Feb 2017 08:11:50 -0500 |
parents | |
children | 19ea355e26b3 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GEO/getGEO.xml Mon Feb 20 08:11:50 2017 -0500 @@ -0,0 +1,39 @@ +<tool id="GEO" name="getGEO" version="1.16.2"> + <requirements> + <requirement type="package" version="3.2.1">R</requirement> + </requirements> +<stdio> + <exit_code range="1:" /> + </stdio> + <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$protocol" "$platform" "$Data_Table"</command> + <inputs> + <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> + <validator type="empty_field" message="This field is required."/> + </param> + </inputs> + <outputs> + <data format="csv" name="protocol" label="protocol.csv"/> + <data format="csv" name="platform" label="platform.csv"/> + <data format="csv" name="Data_Table" label="Data_Table.csv"/> + </outputs> + <tests> + <test> + <param name="test"> + <element name="test-data"> + <collection type="data"> + <element name="GSMTable" value="test-data/input.csv" /> + </collection> + </element> + </param> + <output format="csv" name="protocol" label="test-data/protocol.csv"/> + <output format="csv" name="platform" label="test-data/platform.csv"/> + <output format="csv" name="Data_Table" label="test-data/Data_Table.csv"/> + </test> + </tests> + <help> +**Description** +</help> +<citations> +GEO +</citations> +</tool>