Mercurial > repos > testtool > geo_data

diff GRsetFromGEO/GRsetFromGEO.R @ 21:59122070e61d draft

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Uploaded
author testtool
date Wed, 12 Apr 2017 13:20:50 -0400
parents 882e9c8498fa
children 3d281ad15b83
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line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Wed Apr 12 13:00:22 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Wed Apr 12 13:20:50 2017 -0400
@@ -1,3 +1,5 @@
+require("minfi", quietly = TRUE)
+
 options(warn = -1)
 options("download.file.method"="wget")
 
@@ -5,6 +7,6 @@
 GSE = args[1] 
 output = args[2] 
 
-GRset <- minfi::getGenomicRatioSetFromGEO(GSE)
+GRset <- getGenomicRatioSetFromGEO(GSE)
 
 save(GRset,file = output)