Mercurial > repos > testtool > geo_data
diff GRsetFromGEO/GRsetFromGEO.xml @ 34:59a5237b72a3 draft
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author | testtool |
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date | Fri, 14 Apr 2017 09:25:08 -0400 |
parents | |
children | b3761b109ca9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GRsetFromGEO/GRsetFromGEO.xml Fri Apr 14 09:25:08 2017 -0400 @@ -0,0 +1,38 @@ +<tool id="GRset" name="GRsetFromGEO" version="1.16.2"> + <description> +Reading Illumina methylation array data from GEO + </description> + <requirements> + <requirement type="package" version="3.2.1">R</requirement> + </requirements> +<stdio> + <exit_code range="1:" /> +</stdio> + <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> + <inputs> + <param optional="false" format="txt" name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"> + <validator type="empty_field" message="This field is required."/> + </param> + </inputs> + <outputs> + <data format="rdata" name="output" label="GRsetFromGEO.rdata"/> + </outputs> + <tests> + <test> + <param name="test"> + <element name="test-data"> + <collection type="data"> + <element name="GSE" value="GSE51547"/> + </collection> + </element> + </param> + <output format="rdata" name="output" label="test-data/GRsetFromGEO.rdata"/> + </test> + </tests> + <help> +**Reading Illumina methylation array data from GEO** +</help> +<citations> +DMR +</citations> +</tool>