Mercurial > repos > testtool > geo_data

diff GRsetFromGEO/Untitled.R @ 36:b3761b109ca9 draft

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author testtool
date Mon, 24 Apr 2017 08:50:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO/Untitled.R	Mon Apr 24 08:50:59 2017 -0400
@@ -0,0 +1,10 @@
+require("minfi", quietly = TRUE)
+
+args <- commandArgs(trailingOnly = TRUE)
+GSE = args[1] 
+output = args[2] 
+
+GRset <- getGenomicRatioSetFromGEO(GSE)
+
+save(GRset,output)
+