Mercurial > repos > testtool > geo_data

view GRsetFromGEO/GRsetFromGEO.R @ 25:104499c775e8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Thu, 13 Apr 2017 08:31:13 -0400
parents 59122070e61d
children 3d281ad15b83
line wrap: on
line source

require("minfi", quietly = TRUE)

options(warn = -1)
options("download.file.method"="wget")

args <- commandArgs(trailingOnly = TRUE)
GSE = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(GSE)

save(GRset,file = output)