Mercurial > repos > testtool > geo_data
view GEO/getGEO.xml @ 7:5231cb49c63b draft
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author | testtool |
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date | Mon, 20 Feb 2017 08:11:50 -0500 |
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children | 19ea355e26b3 |
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<tool id="GEO" name="getGEO" version="1.16.2"> <requirements> <requirement type="package" version="3.2.1">R</requirement> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$protocol" "$platform" "$Data_Table"</command> <inputs> <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> <validator type="empty_field" message="This field is required."/> </param> </inputs> <outputs> <data format="csv" name="protocol" label="protocol.csv"/> <data format="csv" name="platform" label="platform.csv"/> <data format="csv" name="Data_Table" label="Data_Table.csv"/> </outputs> <tests> <test> <param name="test"> <element name="test-data"> <collection type="data"> <element name="GSMTable" value="test-data/input.csv" /> </collection> </element> </param> <output format="csv" name="protocol" label="test-data/protocol.csv"/> <output format="csv" name="platform" label="test-data/platform.csv"/> <output format="csv" name="Data_Table" label="test-data/Data_Table.csv"/> </test> </tests> <help> **Description** </help> <citations> GEO </citations> </tool>