annotate TxDb.Hsapiens.UCSC.hg19.knownGene/man/package.Rd @ 39:5447fc8946ed draft default tip

Uploaded
author testtool
date Fri, 13 Oct 2017 11:22:49 -0400
parents ec7a1f7f9a94
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
37
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
1 \name{TxDb.Hsapiens.UCSC.hg19.knownGene}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
2 \docType{package}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
3
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
4 \alias{TxDb.Hsapiens.UCSC.hg19.knownGene-package}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
5 \alias{TxDb.Hsapiens.UCSC.hg19.knownGene}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
6 \alias{TxDb.Hsapiens.UCSC.hg19.knownGene}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
7
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
8
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
9 \title{Annotation package for TxDb object(s)}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
10
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
11 \description{
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
12 This package loads one or more TxDb objects. Such TxDb
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
13 objects are an R interface to prefabricated databases contained by
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
14 this package.
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
15
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
16 The names of any objects exposed by this package indicate the origin and
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
17 resources exposed. So for example TxDb.Hsapiens.UCSC.hg19.knownGene
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
18 would be a TxDb object, of Homo sapiens data from UCSC build
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
19 hg19 based on the knownGene Track.
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
20 }
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
21
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
22 \note{
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
23 This data package was made from resources at UCSC on
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
24 2015-10-07 18:11:28 +0000 (Wed, 07 Oct 2015) and based on the hg19 genome based on the knownGene table
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
25 }
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
26
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
27 \author{Marc Carlson, Bioconductor Package Maintainer <maintainer@bioconductor.org> [cre]}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
28
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
29
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
30 \seealso{
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
31 \link[GenomicFeatures]{transcripts},
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
32 \link[GenomicFeatures]{transcriptsBy}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
33 }
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
34
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
35 \examples{
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
36 ## load the library
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
37 library(TxDb.Hsapiens.UCSC.hg19.knownGene)
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
38 ## list the contents that are loaded into memory
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
39 ls('package:TxDb.Hsapiens.UCSC.hg19.knownGene')
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
40 ## show the db object that is loaded by calling it's name
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
41 TxDb.Hsapiens.UCSC.hg19.knownGene
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
42
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
43 }
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
44
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
45 \keyword{package}
ec7a1f7f9a94 Uploaded
testtool
parents:
diff changeset
46 \keyword{data}